Hello, I am going to move your question over to the galaxt-dev(a)bx.psu.edu mailing list to give it better visibility to the development/local install community. http://wiki.galaxyproject.org/MailingLists#The_lists I didn't find it over here already, but apologies if double posted. Also, since I don't know the best answer, will let others jump in! Best, Jen Galaxy team On 11/14/13 6:35 AM, Xian Su wrote: > Greetings > > I'm having a hard time getting job submission to work via torque. Posted below is the relevant part of my universe file and job_conf.xml. > > The main cause comes from our torque server requiring a queue to be requested. I can submit jobs just fine via job .sub files via command line using qsub -q M30 > > Running jobs via webgui results in the following: > galaxy.jobs.runners.pbs WARNING 2013-11-14 13:54:23,722 (28) pbs_submit failed (try 5/5), PBS error 15039: Route rejected by all destinations > galaxy.jobs.runners.pbs ERROR 2013-11-14 13:54:25,724 (28) All attempts to submit job failed > > On the torque server's pbs logs, I see the corresponding > 11/14/2013 13:54:23;0080;PBS_Server.66159;Req;req_reject;Reject reply code=15039(No default queue specified MSG=requested queue not found), aux=0, type=QueueJob, from xians(a)podmt1-100-62.novalocal > > In my universe_wsgi.ini, I'm currently using the settings: > start_job_runners = pbs > default_cluster_job_runner = pbs:///-q M30 -l nodes=1:ppn=12/ > ^I mainly have no idea how to find the correct syntax for this pbs:/// > > But when I comment out default_cluster_job_runner and instead uncomment the line for the following job conf, I get the same error: > <?xml version="1.0"?> > <job_conf> > <plugins workers="4"> > <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner"/> > <plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" workers="2"/> > </plugins> > <handlers default="handlers"> > <handler id="main" tags="handlers"/> > </handlers> > <destinations default="pbs"> > <destination id="local" runner="local"/> > <destination id="pbs" runner="pbs" tags="mycluster"> > <param id="Resource_List">walltime=72:00:00,nodes=1:ppn=12</param> > <param id="-q">M30</param> > </destination> > </destinations> > <tools> > <tool id="main" handler="main" destination="pbs"/> > </tools> > <limits> > </limits> > </job_conf> > > Thank you in advance for any help. > > Regards, > Xian > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > > http://lists.bx.psu.edu/ > > > To search Galaxy mailing lists use the unified search at: > > > http://galaxyproject.org/search/mailinglists/ -- Jennifer Hillman-Jackson http://galaxyproject.org ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/