Re: [galaxy-dev] Local installation: Uploading fastq file takes ages - why?
On Aug 14, 2013, at 8:39 AM, Boaz Shaanan wrote:
Hi,
On my local galaxy installation (updated to the latest version yesterday), it takes ages (hours!) to upload a fastq files. I attach a report from the the computer on which galaxy is installed. The fastq file is uploaded from 132.72.88.186. Initially there is an error message (the attached file also includes the debug url at the end) and after a while the upload proceeds but takes very long time. Transferring the file by sftp between the two computers takes only seconds. Is there anytning wrong with my installation (i.e. something is not properly defined or something like this).
Hi Boaz, Could you make sure that debug and use_interactive are both set to False in universe_wsgi.ini? Thanks, --nate
I'd appreciate your help.
Boaz
Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel
E-mail: bshaanan@bgu.ac.il Phone: 972-8-647-2220 Skype: boaz.shaanan Fax: 972-8-647-2992 or 972-8-646-1710
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Hi Nate, Thanks for your reply. Both debug and use_interactive are set to true in my universe_wsgi.ini. However, I discovered a short while after sending the message that uploading the gzipped files made the process very fast. Obviously it's a clear short sight on my part, sorry. Regards, Boaz Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel E-mail: bshaanan@bgu.ac.il Phone: 972-8-647-2220 Skype: boaz.shaanan Fax: 972-8-647-2992 or 972-8-646-1710 ________________________________________ From: Nate Coraor [nate@bx.psu.edu] Sent: Thursday, August 29, 2013 5:07 PM To: בעז שאנן Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Local installation: Uploading fastq file takes ages - why? On Aug 14, 2013, at 8:39 AM, Boaz Shaanan wrote:
Hi,
On my local galaxy installation (updated to the latest version yesterday), it takes ages (hours!) to upload a fastq files. I attach a report from the the computer on which galaxy is installed. The fastq file is uploaded from 132.72.88.186. Initially there is an error message (the attached file also includes the debug url at the end) and after a while the upload proceeds but takes very long time. Transferring the file by sftp between the two computers takes only seconds. Is there anytning wrong with my installation (i.e. something is not properly defined or something like this).
Hi Boaz, Could you make sure that debug and use_interactive are both set to False in universe_wsgi.ini? Thanks, --nate
I'd appreciate your help.
Boaz
Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel
E-mail: bshaanan@bgu.ac.il Phone: 972-8-647-2220 Skype: boaz.shaanan Fax: 972-8-647-2992 or 972-8-646-1710
<galaxy_local_server_error.txt>___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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participants (2)
-
Boaz Shaanan -
Nate Coraor