Hi Nils,

You're right, the way used to upload data from an external display to a Galaxy history, for example in the case of Galaxy Interactive Environment as mentionned by Gildas, is to use the Galaxy API.

Cheers,

Yvan

De: "Gildas Le Corguillé" lecorguille@sb-roscoff.fr À: "Nils Paulhe" nils.paulhe@gmail.com Cc: "Galaxy-dev" galaxy-dev@lists.galaxyproject.org Envoyé: Mercredi 22 Novembre 2017 11:03:38 Objet: Re: [galaxy-dev] external display and data editing

Salut Nils,

I think that you should take a look at the Galaxy Interactive Environment (GIE): - [ https://docs.galaxyproject.org/en/master/admin/interactive_environments.html | https://docs.galaxyproject.org/en/master/admin/interactive_environments.html ] - [ https://galaxyproject.github.io/training-material/topics/dev/tutorials/inter... | https://galaxyproject.github.io/training-material/topics/dev/tutorials/inter... ]

Cheers

Gildas

----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste

Plateform ABiMS (Analyses and Bioinformatics for Marine Science) [ http://abims.sb-roscoff.fr/ | http://abims.sb-roscoff.fr ]

Member of the Workflow4Metabolomics project [ http://workflow4metabolomics.org/ | http://workflow4metabolomics.org ]

Station Biologique de Roscoff - UPMC/CNRS - FR2424 Place Georges Teissier 29680 Roscoff FRANCE tel: +33 2 98 29 23 81 ------------------------------------------------------------------

Le 15 nov. 2017 à 09:26, Nils Paulhe < [ mailto:nils.paulhe@gmail.com | nils.paulhe@gmail.com ] > a écrit :

Dear list,

I'm working on data visualization / display in galaxy. I'm wondering if it's possible to save a resource edited from the viewer plugin or an external display in the current history. In my opinion the easier / proper way is to use an external display to show / edit the resources and upload the edited files in the current history using galaxy API.

Does anyone have tried something similar? Cheers

Nils ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: [ https://lists.galaxyproject.org/ | https://lists.galaxyproject.org/ ]

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Hi,

I am using galaxy via Docker. I cannot find saw package on galaxy toolshed. It is available on bioconda: https://bioconda.github.io/recipes/bioconductor-csaw/README.html

How can I use it Galaxy?

Thank you, Deepak

On Nov 22, 2017, at 05:03, Gildas Le Corguillé <lecorguille@sb-roscoff.frmailto:lecorguille@sb-roscoff.fr> wrote:

Salut Nils,

I think that you should take a look at the Galaxy Interactive Environment (GIE): - https://docs.galaxyproject.org/en/master/admin/interactive_environments.html - https://galaxyproject.github.io/training-material/topics/dev/tutorials/inter...

Cheers

Gildas

----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste

Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.frhttp://abims.sb-roscoff.fr/

Member of the Workflow4Metabolomics project http://workflow4metabolomics.orghttp://workflow4metabolomics.org/

Station Biologique de Roscoff - UPMC/CNRS - FR2424 Place Georges Teissier 29680 Roscoff FRANCE tel: +33 2 98 29 23 81 ------------------------------------------------------------------

Le 15 nov. 2017 à 09:26, Nils Paulhe <nils.paulhe@gmail.commailto:nils.paulhe@gmail.com> a écrit :

Dear list,

I'm working on data visualization / display in galaxy. I'm wondering if it's possible to save a resource edited from the viewer plugin or an external display in the current history. In my opinion the easier / proper way is to use an external display to show / edit the resources and upload the edited files in the current history using galaxy API.

Does anyone have tried something similar? Cheers

Nils ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/