I am trying to get repository updates for the ncbi_blast_plus tool which is making following request to the toolshed<http://toolshed.g2.bx.psu.edu/repository/check_for_updates?galaxy_url=http://galaxydev.uabgrid.uab.edu/&name=ncbi_blast_plus&owner=devteam&changeset_revision=d375502056f1> site: http://toolshed.g2.bx.psu.edu/repository/check_for_updates?galaxy_url=http://galaxydev.uabgrid.uab.edu/&name=ncbi_blast_plus&owner=devteam&changeset_revision=d375502056f1 This request is coming back with following response with latest_changeset_revision same as changeset_revision. http://localhost:5000/admin_toolshed/update_to_changeset_revision?tool_shed_url=http://toolshed.g2.bx.psu.edu/&name=ncbi_blast_plus&owner=devteam&changeset_revision=d375502056f1&latest_changeset_revision=d375502056f1&latest_ctx_rev=0 This results in following message in the browser: "The installed repository named 'ncbi_blast_plus' is current, there are no updates available.". The latest ncbi_blast_plus changeset revision in the toolshed is "9dabbfd73c8a", so I am not sure why above update request is coming back with d375502056f1 revision. Any clues on what might be wrong here? Appreciate any further debugging steps. -- Thanks, Shantanu
Hi Shantanu, "updates" are a little bit special. They refer to a changeset of the tool that is not invasive. For example if the tool number did not change. If the change in will affect reproducibility it will get a new "installable revision number". That new revision is only installable with a new installation. Go to the toolshed select ncbi_blast_plus (new revision) hit install. Done. Here is the wiki page with more information: http://wiki.galaxyproject.org/RepositoryRevisions Hope that helps, Bjoern
I am trying to get repository updates for the ncbi_blast_plus tool which is making following request to the toolshed site:
This request is coming back with following response with latest_changeset_revision same as changeset_revision.
This results in following message in the browser: "The installed repository named 'ncbi_blast_plus' is current, there are no updates available.".
The latest ncbi_blast_plus changeset revision in the toolshed is "9dabbfd73c8a", so I am not sure why above update request is coming back with d375502056f1 revision.
Any clues on what might be wrong here? Appreciate any further debugging steps.
-- Thanks, Shantanu ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
-
Björn Grüning
-
Shantanu Pavgi (Campus)