Hi, I uploaded 11 files today (1 to 2Gb compressed files) to my local instance without a problem (as admin). Then I got this error message below and it get stuck at "This dataset is uploading" and I could not upload the last files. Is there anything I can do to solve it? What I notice is that I can still upload small files, before I concatenate them. I have 15 time points and some of them have up to 20 files, so it is easier to concatenate them and them upload. Thank you. Luciano 127.0.0.1 - - [10/Mar/2012:17:01:47 -0500] "POST /library_common/upload_library_dataset HTTP/1.1" 500 - " http://127.0.0.1:8080/library_common/upload_library_dataset?library_id=f597429621d6eb2b&show_deleted=False&cntrller=library_admin&folder_id=f597429621d6eb2b&use_panels=False" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" Debug at: http://127.0.0.1:8080/_debug/view/1331420472 ---------------------------------------- Exception happened during processing of request from ('127.0.0.1', 35033) Traceback (most recent call last): File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 1053, in process_request_in_thread self.finish_request(request, client_address) File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request self.RequestHandlerClass(request, client_address, self) File "/usr/lib/python2.7/SocketServer.py", line 639, in __init__ self.handle() File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 432, in handle BaseHTTPRequestHandler.handle(self) File "/usr/lib/python2.7/BaseHTTPServer.py", line 343, in handle self.handle_one_request() File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 427, in handle_one_request self.wsgi_execute() File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 287, in wsgi_execute self.wsgi_start_response) File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/urlmap.py", line 202, in __call__ return app(environ, start_response) File "/home/koala2/galaxy-central/lib/galaxy/web/framework/middleware/xforwardedhost.py", line 21, in __call__ return self.app( environ, start_response ) File "/home/koala2/galaxy-central/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/config.py", line 164, in __call__ app_iter = self.application(environ, start_response) File "/home/koala2/galaxy-central/lib/galaxy/web/framework/middleware/translogger.py", line 68, in __call__ return self.application(environ, replacement_start_response) File "/home/koala2/galaxy-central/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py", line 226, in __call__ return self.respond(environ, start_response) File "/home/koala2/galaxy-central/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py", line 399, in respond if self.xmlhttp_key in req.params: File "/home/koala2/galaxy-central/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", line 900, in params params = self.str_params File "/home/koala2/galaxy-central/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", line 892, in str_params return NestedMultiDict(self.str_GET, self.str_POST) File "/home/koala2/galaxy-central/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", line 818, in str_POST keep_blank_values=True) File "/usr/lib/python2.7/cgi.py", line 508, in __init__ self.read_multi(environ, keep_blank_values, strict_parsing) File "/usr/lib/python2.7/cgi.py", line 632, in read_multi environ, keep_blank_values, strict_parsing) File "/usr/lib/python2.7/cgi.py", line 510, in __init__ self.read_single() File "/usr/lib/python2.7/cgi.py", line 647, in read_single self.read_lines() File "/home/koala2/galaxy-central/lib/galaxy/web/framework/base.py", line 268, in read_lines self.read_lines_to_outerboundary() File "/usr/lib/python2.7/cgi.py", line 697, in read_lines_to_outerboundary line = self.fp.readline(1<<16) File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 467, in readline data = self.file.readline(self.length - self._consumed) File "/usr/lib/python2.7/socket.py", line 412, in readline bline = buf.readline(size) OverflowError: signed integer is less than minimum ----------------------------------------
On Mar 10, 2012, at 6:25 PM, Luciano Cosme wrote:
Hi, I uploaded 11 files today (1 to 2Gb compressed files) to my local instance without a problem (as admin). Then I got this error message below and it get stuck at "This dataset is uploading" and I could not upload the last files. Is there anything I can do to solve it? What I notice is that I can still upload small files, before I concatenate them. I have 15 time points and some of them have up to 20 files, so it is easier to concatenate them and them upload. Thank you.
Hi Luciano, Are you uploading via the browser? For larger files, it would likely be much easier to use one of the filesystem import methods. Also, I would suggest setting `debug = False` and `use_interactive = False` in universe_wsgi.ini. --nate
Luciano
127.0.0.1 - - [10/Mar/2012:17:01:47 -0500] "POST /library_common/upload_library_dataset HTTP/1.1" 500 - "http://127.0.0.1:8080/library_common/upload_library_dataset?library_id=f597429621d6eb2b&show_deleted=False&cntrller=library_admin&folder_id=f597429621d6eb2b&use_panels=False" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" Debug at: http://127.0.0.1:8080/_debug/view/1331420472 ---------------------------------------- Exception happened during processing of request from ('127.0.0.1', 35033) Traceback (most recent call last): File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 1053, in process_request_in_thread self.finish_request(request, client_address) File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request self.RequestHandlerClass(request, client_address, self) File "/usr/lib/python2.7/SocketServer.py", line 639, in __init__ self.handle() File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 432, in handle BaseHTTPRequestHandler.handle(self) File "/usr/lib/python2.7/BaseHTTPServer.py", line 343, in handle self.handle_one_request() File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 427, in handle_one_request self.wsgi_execute() File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 287, in wsgi_execute self.wsgi_start_response) File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/urlmap.py", line 202, in __call__ return app(environ, start_response) File "/home/koala2/galaxy-central/lib/galaxy/web/framework/middleware/xforwardedhost.py", line 21, in __call__ return self.app( environ, start_response ) File "/home/koala2/galaxy-central/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/config.py", line 164, in __call__ app_iter = self.application(environ, start_response) File "/home/koala2/galaxy-central/lib/galaxy/web/framework/middleware/translogger.py", line 68, in __call__ return self.application(environ, replacement_start_response) File "/home/koala2/galaxy-central/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py", line 226, in __call__ return self.respond(environ, start_response) File "/home/koala2/galaxy-central/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py", line 399, in respond if self.xmlhttp_key in req.params: File "/home/koala2/galaxy-central/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", line 900, in params params = self.str_params File "/home/koala2/galaxy-central/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", line 892, in str_params return NestedMultiDict(self.str_GET, self.str_POST) File "/home/koala2/galaxy-central/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", line 818, in str_POST keep_blank_values=True) File "/usr/lib/python2.7/cgi.py", line 508, in __init__ self.read_multi(environ, keep_blank_values, strict_parsing) File "/usr/lib/python2.7/cgi.py", line 632, in read_multi environ, keep_blank_values, strict_parsing) File "/usr/lib/python2.7/cgi.py", line 510, in __init__ self.read_single() File "/usr/lib/python2.7/cgi.py", line 647, in read_single self.read_lines() File "/home/koala2/galaxy-central/lib/galaxy/web/framework/base.py", line 268, in read_lines self.read_lines_to_outerboundary() File "/usr/lib/python2.7/cgi.py", line 697, in read_lines_to_outerboundary line = self.fp.readline(1<<16) File "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 467, in readline data = self.file.readline(self.length - self._consumed) File "/usr/lib/python2.7/socket.py", line 412, in readline bline = buf.readline(size) OverflowError: signed integer is less than minimum ----------------------------------------
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participants (2)
-
Luciano Cosme -
Nate Coraor