Hello galaxy community, I have a question regarding testing tools. I just setup a galaxy server to submit jobs to a cluster. Everything seems to be in order so far. Are there established workflows with test data that allow you to test a typical analysis (ex. RNA-Seq - from raw reads to counts, ChIP-Seq-from raw reads to enriched regions, SNP analysis-from raw reads to a VCF file etc). I want to be able run my tools on small test sets to make sure everything is fine and dandy, before I open it up to some beta testers. As an aside does galaxy have any dataset size limitations? Does it work equally well with an 8GB fastq/bam file compared to a 50-100GB fastq/bam? Thanks Ravi
On Sat, Mar 22, 2014 at 12:20 AM, Ravi Alla <ravi.alla@berkeley.edu> wrote:
Hello galaxy community, I have a question regarding testing tools. I just setup a galaxy server to submit jobs to a cluster. Everything seems to be in order so far. Are there established workflows with test data that allow you to test a typical analysis ...
There's an open issue for adding sample data with outputs to workflows for functional testing: https://trello.com/c/S5CZGOb3/1061-workflows-need-functional-tests-like-we-h... Peter
participants (2)
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Peter Cock
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Ravi Alla