details: http://www.bx.psu.edu/hg/galaxy/rev/e945dcdfd578 changeset: 2888:e945dcdfd578 user: Ross Lazarus ross.lazarus@gmail.com date: Thu Oct 15 19:01:07 2009 -0400 description: moved the rgGRR svg scripts to static/scripts/tools/rgenetics and decreased chattiness in genetics.py

8 file(s) affected in this change:

lib/galaxy/datatypes/genetics.py scripts/check_eggs.py static/scripts/checkbox_and_radiobutton.js static/scripts/helper_functions.js static/scripts/timer.js static/scripts/tools/rgenetics/checkbox_and_radiobutton.js static/scripts/tools/rgenetics/helper_functions.js static/scripts/tools/rgenetics/timer.js

diffs (1353 lines):

diff -r cbe28b41fb9d -r e945dcdfd578 lib/galaxy/datatypes/genetics.py --- a/lib/galaxy/datatypes/genetics.py Thu Oct 15 10:48:38 2009 -0400 +++ b/lib/galaxy/datatypes/genetics.py Thu Oct 15 19:01:07 2009 -0400 @@ -25,6 +25,7 @@ from galaxy.datatypes.images import Html

gal_Log = logging.getLogger(__name__) +verbose = False

class GenomeGraphs( Tabular ): """Tab delimited data containing a marker id and any number of numeric values""" @@ -247,7 +248,8 @@ head,rest = os.path.split(old) newpath = os.path.join(head,newbase) newpath = '%s%s' % (newpath,e) - shutil.move(oldpath,newpath) + if oldpath <> newpath: + shutil.move(oldpath,newpath) return newpath bn = dataset.metadata.base_name efp = dataset.extra_files_path @@ -266,20 +268,32 @@

def set_meta( self, dataset, **kwd ):

- """ - NOTE we apply the tabular machinary to the phenodata extracted - from a BioC eSet or affybatch. + """for lped/pbed eg

""" + if kwd.get('overwrite') == False: + if verbose: + gal_Log.debug('@@@ rgenetics set_meta called with overwrite = False') + return True try: - flist = os.listdir(dataset.extra_files_path) - except: - gal_Log.debug('@@@rgenetics set_meta failed - no dataset?') - return + efp = dataset.extra_files_path + except: + if verbose: + gal_Log.debug('@@@rgenetics set_meta failed %s - dataset %s has no efp ?' % (sys.exc_info()[0], dataset.name)) + return False + try: + flist = os.listdir(efp) + except: + if verbose: gal_Log.debug('@@@rgenetics set_meta failed %s - dataset %s has no efp ?' % (sys.exc_info()[0],dataset.name)) + return False + if len(flist) == 0: + if verbose: + gal_Log.debug('@@@rgenetics set_meta failed - %s efp %s is empty?' % (dataset.name,efp)) + return False bn = None for f in flist: - n = os.path.splitext(f)[0] - if not bn: + n,e = os.path.splitext(f)[0] + if (not bn) and e in ('.ped','.map','.bim','.fam'): bn = n dataset.metadata.base_name = bn if not bn: @@ -607,8 +621,9 @@ try: flist = os.listdir(dataset.extra_files_path) except: - gal_Log.debug('@@@rexpression set_meta failed - no dataset?') - return + if verbose: + gal_Log.debug('@@@rexpression set_meta failed - no dataset?') + return False bn = None for f in flist: n = os.path.splitext(f)[0] diff -r cbe28b41fb9d -r e945dcdfd578 scripts/check_eggs.py --- a/scripts/check_eggs.py Thu Oct 15 10:48:38 2009 -0400 +++ b/scripts/check_eggs.py Thu Oct 15 19:01:07 2009 -0400 @@ -1,3 +1,4 @@ +#! /usr/bin/python """ usage: check_eggs.py """ diff -r cbe28b41fb9d -r e945dcdfd578 static/scripts/checkbox_and_radiobutton.js --- a/static/scripts/checkbox_and_radiobutton.js Thu Oct 15 10:48:38 2009 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,347 +0,0 @@ -/* -Scripts to create interactive checkboxes and radio buttons in SVG using ECMA script -Copyright (C) <2007> <Andreas Neumann> -Version 1.1.3, 2007-08-09 -neumann@karto.baug.ethz.ch -http://www.carto.net/ -http://www.carto.net/neumann/ - -Credits: -* Guy Morton for providing a fix to let users toggle checkboxes by clicking on text labels -* Bruce Rindahl for providing the bugfix described in version 1.1.2 -* Simon Shutter for providing a fix for the ASV in IE crash when reloading the SVG file after calling the .remove() method on a checkbox - ----- - -Documentation: http://www.carto.net/papers/svg/gui/checkbox_and_radiobutton/ - ----- - -current version: 1.1.3 - -version history: -1.0 (2006-03-13) -initial version - -1.1 (2006-07-11) -text labels are now clickable (thanks to Guy Morton) -added method .moveTo() to move checkbox to a different location -introduced new constructor parameter labelYOffset to allow more flexible placement of the text label - -1.1.1 (2007-02-06) -added cursor pointer to the text label and use element representing the checkBox - -1.1.2 (2007-04-19) -bug fix: this.selectedIndex was not correctly initialized in method addCheckBox of the radioButtonGroup object - -1.1.3 (2007-08-09) -bug fix: the method .remove() was slightly modified (using removeEventListener) for avoiding a crash related to the method after reloading the SVG file - -------- - - -This ECMA script library is free software; you can redistribute it and/or -modify it under the terms of the GNU Lesser General Public -License as published by the Free Software Foundation; either -version 2.1 of the License, or (at your option) any later version. - -This library is distributed in the hope that it will be useful, -but WITHOUT ANY WARRANTY; without even the implied warranty of -MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -Lesser General Public License for more details. - -You should have received a copy of the GNU Lesser General Public -License along with this library (lesser_gpl.txt); if not, write to the Free Software -Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA - ----- - -original document site: http://www.carto.net/papers/svg/gui/checkbox_and_radiobutton/ -Please contact the author in case you want to use code or ideas commercially. -If you use this code, please include this copyright header, the included full -LGPL 2.1 text and read the terms provided in the LGPL 2.1 license -(http://www.gnu.org/copyleft/lesser.txt) - -------------------------------- - -Please report bugs and send improvements to neumann@karto.baug.ethz.ch -If you use this control, please link to the original (http://www.carto.net/papers/svg/gui/checkbox_and_radiobutton/) -somewhere in the source-code-comment or the "about" of your project and give credits, thanks! - -*/ - -function checkBox(id,parentNode,x,y,checkboxId,checkcrossId,checkedStatus,labelText,textStyles,labelDistance,labelYOffset,radioButtonGroup,functionToCall) { - var nrArguments = 13; - var createCheckbox= true; - if (arguments.length == nrArguments) { - this.id = id; //an internal id, this id is not used in the SVG Dom tree - this.parentNode = parentNode; //the parentNode, string or nodeReference - this.x = x; //the center of the checkBox - this.y = y; //the center of the checkBox - this.checkboxId = checkboxId; //the id of the checkbox symbol (background) - this.checkcrossId = checkcrossId; //the id of the checkbox symbol (foreground), pointer-events should be set to "none" - this.checkedStatus = checkedStatus; //a status variable (true|false), indicates if checkbox is on or off - this.labelText = labelText; //the text of the checkbox label to be displayed, use undefined or empty string if you don't need a label text - this.textStyles = textStyles; //an array of literals containing the text settings - if (!this.textStyles["font-size"]) { - this.textStyles["font-size"] = 12; - } - this.labelDistance = labelDistance; //a distance defined from the center of the checkbox to the left of the text of the label - this.labelYOffset = labelYOffset; //a y offset value for the text label in relation to the checkbox symbol center - this.radioButtonGroup = radioButtonGroup; //a reference to a radio button group, if this is a standalone checkBox, just use the parameter undefined - this.functionToCall = functionToCall; //the function to call after triggering checkBox - this.exists = true; //status that indicates if checkbox exists or not, is set to false after method .remove() was called - this.label = undefined; //later a reference to the label text node - } - else { - createCheckbox = false; - alert("Error in checkbox ("+id+"): wrong nr of arguments! You have to pass over "+nrArguments+" parameters."); - } - if (createCheckbox) { - //timer stuff - this.timer = new Timer(this); //a Timer instance for calling the functionToCall - if (this.radioButtonGroup) { - this.timerMs = 0; - } - else { - this.timerMs = 200; //a constant of this object that is used in conjunction with the timer - functionToCall is called after 200 ms - } - //create checkbox - this.createCheckBox(); - } - else { - alert("Could not create checkbox with id '"+id+"' due to errors in the constructor parameters"); - } -} - -//this method creates all necessary checkbox geometry -checkBox.prototype.createCheckBox = function() { - if (typeof(this.parentNode) == "string") { - this.parentNode = document.getElementById(this.parentNode); - } - //create checkbox - this.checkBox = document.createElementNS(svgNS,"use"); - this.checkBox.setAttributeNS(null,"x",this.x); - this.checkBox.setAttributeNS(null,"y",this.y); - this.checkBox.setAttributeNS(xlinkNS,"href","#"+this.checkboxId); - this.checkBox.addEventListener("click",this,false); - this.checkBox.setAttributeNS(null,"cursor","pointer"); - this.parentNode.appendChild(this.checkBox); - //create checkcross - this.checkCross = document.createElementNS(svgNS,"use"); - this.checkCross.setAttributeNS(null,"x",this.x); - this.checkCross.setAttributeNS(null,"y",this.y); - this.checkCross.setAttributeNS(xlinkNS,"href","#"+this.checkcrossId); - this.parentNode.appendChild(this.checkCross); - if (this.checkedStatus == false) { - this.checkCross.setAttributeNS(null,"display","none"); - } - //create label, if any - if (this.labelText) { - if (this.labelText.length > 0) { - this.label = document.createElementNS(svgNS,"text"); - for (var attrib in this.textStyles) { - var value = this.textStyles[attrib]; - if (attrib == "font-size") { - value += "px"; - } - this.label.setAttributeNS(null,attrib,value); - } - this.label.setAttributeNS(null,"x",(this.x + this.labelDistance)); - this.label.setAttributeNS(null,"y",(this.y + this.labelYOffset)); - this.label.setAttributeNS(null,"cursor","pointer"); - var labelTextNode = document.createTextNode(this.labelText); - this.label.appendChild(labelTextNode); - this.label.setAttributeNS(null,"pointer-events","all"); - this.label.addEventListener("click",this,false); - this.parentNode.appendChild(this.label); - } - } - if (this.radioButtonGroup) { - this.radioButtonGroup.addCheckBox(this); - } -} - -checkBox.prototype.handleEvent = function(evt) { - if (evt.type == "click") { - if (this.checkedStatus == true) { - this.checkCross.setAttributeNS(null,"display","none"); - this.checkedStatus = false; - } - else { - this.checkCross.setAttributeNS(null,"display","inline"); - this.checkedStatus = true; - } - } - this.timer.setTimeout("fireFunction",this.timerMs); -} - -checkBox.prototype.fireFunction = function() { - if (this.radioButtonGroup) { - this.radioButtonGroup.selectById(this.id,true); - } - else { - if (typeof(this.functionToCall) == "function") { - this.functionToCall(this.id,this.checkedStatus,this.labelText); - } - if (typeof(this.functionToCall) == "object") { - this.functionToCall.checkBoxChanged(this.id,this.checkedStatus,this.labelText); - } - if (typeof(this.functionToCall) == undefined) { - return; - } - } -} - -checkBox.prototype.check = function(FireFunction) { - this.checkCross.setAttributeNS(null,"display","inherit"); - this.checkedStatus = true; - if (FireFunction) { - this.timer.setTimeout("fireFunction",this.timerMs); - } -} - -checkBox.prototype.uncheck = function(FireFunction) { - this.checkCross.setAttributeNS(null,"display","none"); - this.checkedStatus = false; - if (FireFunction) { - this.timer.setTimeout("fireFunction",this.timerMs); - } -} - -//move checkbox to a different position -checkBox.prototype.moveTo = function(moveX,moveY) { - this.x = moveX; - this.y = moveY; - //move checkbox - this.checkBox.setAttributeNS(null,"x",this.x); - this.checkBox.setAttributeNS(null,"y",this.y); - //move checkcross - this.checkCross.setAttributeNS(null,"x",this.x); - this.checkCross.setAttributeNS(null,"y",this.y); - //move text label - if (this.labelText) { - this.label.setAttributeNS(null,"x",(this.x + this.labelDistance)); - this.label.setAttributeNS(null,"y",(this.y + this.labelYOffset)); - } -} - -checkBox.prototype.remove = function(FireFunction) { - this.checkBox.removeEventListener("click",this,false); - this.parentNode.removeChild(this.checkBox); - this.parentNode.removeChild(this.checkCross); - if (this.label) { - this.parentNode.removeChild(this.label); - } - this.exists = false; -} - -checkBox.prototype.setLabelText = function(labelText) { - this.labelText = labelText - if (this.label) { - this.label.firstChild.nodeValue = labelText; - } - else { - if (this.labelText.length > 0) { - this.label = document.createElementNS(svgNS,"text"); - for (var attrib in this.textStyles) { - value = this.textStyles[attrib]; - if (attrib == "font-size") { - value += "px"; - } - this.label.setAttributeNS(null,attrib,value); - } - this.label.setAttributeNS(null,"x",(this.x + this.labelDistance)); - this.label.setAttributeNS(null,"y",(this.y + this.textStyles["font-size"] * 0.3)); - var labelTextNode = document.createTextNode(this.labelText); - this.label.appendChild(labelTextNode); - this.parentNode.appendChild(this.label); - } - } -} - -/* start of the radioButtonGroup object */ - -function radioButtonGroup(id,functionToCall) { - var nrArguments = 2; - if (arguments.length == nrArguments) { - this.id = id; - if (typeof(functionToCall) == "function" || typeof(functionToCall) == "object" || typeof(functionToCall) == undefined) { - this.functionToCall = functionToCall; - } - else { - alert("Error in radiobutton with ("+id+"): argument functionToCall is not of type 'function', 'object' or undefined!"); - } - this.checkBoxes = new Array(); //this array will hold checkbox objects - this.selectedId = undefined; //holds the id of the active radio button - this.selectedIndex = undefined; //holds the index of the active radio button - //timer stuff - this.timer = new Timer(this); //a Timer instance for calling the functionToCall - this.timerMs = 200; //a constant of this object that is used in conjunction with the timer - functionToCall is called after 200 ms - } - else { - alert("Error in radiobutton with ("+id+"): wrong nr of arguments! You have to pass over "+nrArguments+" parameters."); - } -} - -radioButtonGroup.prototype.addCheckBox = function(checkBoxObj) { - this.checkBoxes.push(checkBoxObj); - if (checkBoxObj.checkedStatus) { - this.selectedId = checkBoxObj.id; - this.selectedIndex = this.checkBoxes.length - 1; - } -} - -//change radio button selection by id -radioButtonGroup.prototype.selectById = function(cbId,fireFunction) { - var found = false; - for (var i=0;i<this.checkBoxes.length;i++) { - if (this.checkBoxes[i].id == cbId) { - this.selectedId = cbId; - this.selectedIndex = i; - if (this.checkBoxes[i].checkedStatus == false) { - this.checkBoxes[i].check(false); - } - found = true; - } - else { - this.checkBoxes[i].uncheck(false); - } - } - if (found) { - if (fireFunction) { - this.timer.setTimeout("fireFunction",this.timerMs); - } - } - else { - alert("Error in radiobutton with ("+this.id+"): could not find checkbox with id '"+cbId+"'"); - } -} - -//change radio button selection by label name -radioButtonGroup.prototype.selectByLabelname = function(labelName,fireFunction) { - var id = -1; - for (var i=0;i<this.checkBoxes.length;i++) { - if (this.checkBoxes[i].labelText == labelName) { - id = this.checkBoxes[i].id; - } - } - if (id == -1) { - alert("Error in radiobutton with ("+this.id+"): could not find checkbox with label '"+labelName+"'"); - } - else { - this.selectById(id,fireFunction); - } -} - -radioButtonGroup.prototype.fireFunction = function() { - if (typeof(this.functionToCall) == "function") { - this.functionToCall(this.id,this.selectedId,this.checkBoxes[this.selectedIndex].labelText); - } - if (typeof(this.functionToCall) == "object") { - this.functionToCall.radioButtonChanged(this.id,this.selectedId,this.checkBoxes[this.selectedIndex].labelText); - } - if (typeof(this.functionToCall) == undefined) { - return; - } -} \ No newline at end of file diff -r cbe28b41fb9d -r e945dcdfd578 static/scripts/helper_functions.js --- a/static/scripts/helper_functions.js Thu Oct 15 10:48:38 2009 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,817 +0,0 @@ -/** - * @fileoverview - * - * ECMAScript <a href="http://www.carto.net/papers/svg/resources/helper_functions.html">helper functions</a>, main purpose is to serve in SVG mapping or other SVG based web applications - * - * This ECMA script library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 2.1 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public - * License along with this library (http://www.carto.net/papers/svg/resources/lesser_gpl.txt); if not, write to the Free Software - * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA - * - * Please report bugs and send improvements to neumann@karto.baug.ethz.ch - * If you use these scripts, please link to the original (http://www.carto.net/papers/svg/resources/helper_functions.html) - * somewhere in the source-code-comment or the "about" of your project and give credits, thanks! - * - * See <a href="js_docs_out/overview-summary-helper_functions.js.html">documentation</a>. - * - * @author Andreas Neumann a.neumann@carto.net - * @copyright LGPL 2.1 <a href="http://www.gnu.org/copyleft/lesser.txt">Gnu LGPL 2.1</a> - * @credits Bruce Rindahl, numerous people on svgdevelopers@yahoogroups.com - */ - -//global variables necessary to create elements in these namespaces, do not delete them!!!! - -/** - * This variable is a shortcut to the full URL of the SVG namespace - * @final - * @type String - */ -var svgNS = "http://www.w3.org/2000/svg"; - -/** - * This variable is a shortcut to the full URL of the XLink namespace - * @final - * @type String - */ -var xlinkNS = "http://www.w3.org/1999/xlink"; - -/** - * This variable is a shortcut to the full URL of the attrib namespace - * @final - * @type String - */ -var cartoNS = "http://www.carto.net/attrib"; - -/** - * This variable is a alias to the full URL of the attrib namespace - * @final - * @type String - */ -var attribNS = "http://www.carto.net/attrib"; - -/** - * This variable is a alias to the full URL of the Batik extension namespace - * @final - * @type String - */ -var batikNS = "http://xml.apache.org/batik/ext"; - -/** - * Returns the polar direction from a given vector - * @param {Number} xdiff the x-part of the vector - * @param {Number} ydiff the y-part of the vector - * @return direction the direction in radians - * @type Number - * @version 1.0 (2007-04-30) - * @see #toPolarDist - * @see #toRectX - * @see #toRectY - */ -function toPolarDir(xdiff,ydiff) { - var direction = (Math.atan2(ydiff,xdiff)); - return(direction); -} - -/** - * Returns the polar distance from a given vector - * @param {Number} xdiff the x-part of the vector - * @param {Number} ydiff the y-part of the vector - * @return distance the distance - * @type Number - * @version 1.0 (2007-04-30) - * @see #toPolarDir - * @see #toRectX - * @see #toRectY - */ -function toPolarDist(xdiff,ydiff) { - var distance = Math.sqrt(xdiff * xdiff + ydiff * ydiff); - return(distance); -} - -/** - * Returns the x-part of a vector from a given direction and distance - * @param {Number} direction the direction (in radians) - * @param {Number} distance the distance - * @return x the x-part of the vector - * @type Number - * @version 1.0 (2007-04-30) - * @see #toPolarDist - * @see #toPolarDir - * @see #toRectY - */ -function toRectX(direction,distance) { - var x = distance * Math.cos(direction); - return(x); -} - -/** - * Returns the y-part of the vector from a given direction and distance - * @param {Number} direction the direction (in radians) - * @param {Number} distance the distance - * @return y the y-part of the vector - * @type Number - * @version 1.0 (2007-04-30) - * @see #toPolarDist - * @see #toPolarDir - * @see #toRectX - */ -function toRectY(direction,distance) { - y = distance * Math.sin(direction); - return(y); -} - -/** - * Converts degrees to radians - * @param {Number} deg the degree value - * @return rad the radians value - * @type Number - * @version 1.0 (2007-04-30) - * @see #RadToDeg - */ -function DegToRad(deg) { - return (deg / 180.0 * Math.PI); -} - -/** - * Converts radians to degrees - * @param {Number} rad the radians value - * @return deg the degree value - * @type Number - * @version 1.0 (2007-04-30) - * @see #DegToRad - */ -function RadToDeg(rad) { - return (rad / Math.PI * 180.0); -} - -/** - * Converts decimal degrees to degrees, minutes, seconds - * @param {Number} dd the decimal degree value - * @return degrees the degree values in the following notation: {deg:degrees,min:minutes,sec:seconds} - * @type literal - * @version 1.0 (2007-04-30) - * @see #dms2dd - */ -function dd2dms(dd) { - var minutes = (Math.abs(dd) - Math.floor(Math.abs(dd))) * 60; - var seconds = (minutes - Math.floor(minutes)) * 60; - var minutes = Math.floor(minutes); - if (dd >= 0) { - var degrees = Math.floor(dd); - } - else { - var degrees = Math.ceil(dd); - } - return {deg:degrees,min:minutes,sec:seconds}; -} - -/** - * Converts degrees, minutes and seconds to decimal degrees - * @param {Number} deg the degree value - * @param {Number} min the minute value - * @param {Number} sec the second value - * @return deg the decimal degree values - * @type Number - * @version 1.0 (2007-04-30) - * @see #dd2dms - */ -function dms2dd(deg,min,sec) { - if (deg < 0) { - return deg - (min / 60) - (sec / 3600); - } - else { - return deg + (min / 60) + (sec / 3600); - } -} - -/** - * log function, missing in the standard Math object - * @param {Number} x the value where the log function should be applied to - * @param {Number} b the base value for the log function - * @return logResult the result of the log function - * @type Number - * @version 1.0 (2007-04-30) - */ -function log(x,b) { - if(b==null) b=Math.E; - return Math.log(x)/Math.log(b); -} - -/** - * interpolates a value (e.g. elevation) bilinearly based on the position within a cell with 4 corner values - * @param {Number} za the value at the upper left corner of the cell - * @param {Number} zb the value at the upper right corner of the cell - * @param {Number} zc the value at the lower right corner of the cell - * @param {Number} zd the value at the lower left corner of the cell - * @param {Number} xpos the x position of the point where a new value should be interpolated - * @param {Number} ypos the y position of the point where a new value should be interpolated - * @param {Number} ax the x position of the lower left corner of the cell - * @param {Number} ay the y position of the lower left corner of the cell - * @param {Number} cellsize the size of the cell - * @return interpol_value the result of the bilinear interpolation function - * @type Number - * @version 1.0 (2007-04-30) - */ -function intBilinear(za,zb,zc,zd,xpos,ypos,ax,ay,cellsize) { //bilinear interpolation function - var e = (xpos - ax) / cellsize; - var f = (ypos - ay) / cellsize; - - //calculation of weights - var wa = (1 - e) * (1 - f); - var wb = e * (1 - f); - var wc = e * f; - var wd = f * (1 - e); - - var interpol_value = wa * zc + wb * zd + wc * za + wd * zb; - return interpol_value; -} - -/** - * tests if a given point is left or right of a given line - * @param {Number} pointx the x position of the given point - * @param {Number} pointy the y position of the given point - * @param {Number} linex1 the x position of line's start point - * @param {Number} liney1 the y position of line's start point - * @param {Number} linex2 the x position of line's end point - * @param {Number} liney2 the y position of line's end point - * @return leftof the result of the leftOfTest, 1 means leftOf, 0 means rightOf - * @type Number (integer, 0|1) - * @version 1.0 (2007-04-30) - */ -function leftOfTest(pointx,pointy,linex1,liney1,linex2,liney2) { - var result = (liney1 - pointy) * (linex2 - linex1) - (linex1 - pointx) * (liney2 - liney1); - if (result < 0) { - var leftof = 1; //case left of - } - else { - var leftof = 0; //case left of - } - return leftof; -} - -/** - * calculates the distance between a given point and a given line - * @param {Number} pointx the x position of the given point - * @param {Number} pointy the y position of the given point - * @param {Number} linex1 the x position of line's start point - * @param {Number} liney1 the y position of line's start point - * @param {Number} linex2 the x position of line's end point - * @param {Number} liney2 the y position of line's end point - * @return distance the result of the leftOfTest, 1 means leftOf, 0 means rightOf - * @type Number - * @version 1.0 (2007-04-30) - */ -function distFromLine(xpoint,ypoint,linex1,liney1,linex2,liney2) { - var dx = linex2 - linex1; - var dy = liney2 - liney1; - var distance = (dy * (xpoint - linex1) - dx * (ypoint - liney1)) / Math.sqrt(Math.pow(dx,2) + Math.pow(dy,2)); - return distance; -} - -/** - * calculates the angle between two vectors (lines) - * @param {Number} ax the x part of vector a - * @param {Number} ay the y part of vector a - * @param {Number} bx the x part of vector b - * @param {Number} by the y part of vector b - * @return angle the angle in radians - * @type Number - * @version 1.0 (2007-04-30) - * @credits <a href="http://www.mathe-online.at/mathint/vect2/i.html#Winkel">Mathe Online (Winkel)</a> - */ -function angleBetwTwoLines(ax,ay,bx,by) { - var angle = Math.acos((ax * bx + ay * by) / (Math.sqrt(Math.pow(ax,2) + Math.pow(ay,2)) * Math.sqrt(Math.pow(bx,2) + Math.pow(by,2)))); - return angle; -} - -/** - * calculates the bisector vector for two given vectors - * @param {Number} ax the x part of vector a - * @param {Number} ay the y part of vector a - * @param {Number} bx the x part of vector b - * @param {Number} by the y part of vector b - * @return c the resulting vector as an Array, c[0] is the x part of the vector, c[1] is the y part - * @type Array - * @version 1.0 (2007-04-30) - * @credits <a href="http://www.mathe-online.at/mathint/vect1/i.html#Winkelsymmetrale">Mathe Online (Winkelsymmetrale)</a> - * see #calcBisectorAngle - * */ -function calcBisectorVector(ax,ay,bx,by) { - var betraga = Math.sqrt(Math.pow(ax,2) + Math.pow(ay,2)); - var betragb = Math.sqrt(Math.pow(bx,2) + Math.pow(by,2)); - var c = new Array(); - c[0] = ax / betraga + bx / betragb; - c[1] = ay / betraga + by / betragb; - return c; -} - -/** - * calculates the bisector angle for two given vectors - * @param {Number} ax the x part of vector a - * @param {Number} ay the y part of vector a - * @param {Number} bx the x part of vector b - * @param {Number} by the y part of vector b - * @return angle the bisector angle in radians - * @type Number - * @version 1.0 (2007-04-30) - * @credits <a href="http://www.mathe-online.at/mathint/vect1/i.html#Winkelsymmetrale">Mathe Online (Winkelsymmetrale)</a> - * see #calcBisectorVector - * */ -function calcBisectorAngle(ax,ay,bx,by) { - var betraga = Math.sqrt(Math.pow(ax,2) + Math.pow(ay,2)); - var betragb = Math.sqrt(Math.pow(bx,2) + Math.pow(by,2)); - var c1 = ax / betraga + bx / betragb; - var c2 = ay / betraga + by / betragb; - var angle = toPolarDir(c1,c2); - return angle; -} - -/** - * calculates the intersection point of two given lines - * @param {Number} line1x1 the x the start point of line 1 - * @param {Number} line1y1 the y the start point of line 1 - * @param {Number} line1x2 the x the end point of line 1 - * @param {Number} line1y2 the y the end point of line 1 - * @return interSectPoint the intersection point, interSectPoint.x contains x-part, interSectPoint.y the y-part of the resulting coordinate - * @type Object - * @version 1.0 (2007-04-30) - * @credits <a href="http://astronomy.swin.edu.au/~pbourke/geometry/lineline2d/">P. Bourke</a> - */ -function intersect2lines(line1x1,line1y1,line1x2,line1y2,line2x1,line2y1,line2x2,line2y2) { - var interSectPoint = new Object(); - var denominator = (line2y2 - line2y1)*(line1x2 - line1x1) - (line2x2 - line2x1)*(line1y2 - line1y1); - if (denominator == 0) { - alert("lines are parallel"); - } - else { - var ua = ((line2x2 - line2x1)*(line1y1 - line2y1) - (line2y2 - line2y1)*(line1x1 - line2x1)) / denominator; - var ub = ((line1x2 - line1x1)*(line1y1 - line2y1) - (line1y2 - line1y1)*(line1x1 - line2x1)) / denominator; - } - interSectPoint["x"] = line1x1 + ua * (line1x2 - line1x1); - interSectPoint["y"] = line1y1 + ua * (line1y2 - line1y1); - return interSectPoint; -} - -/** - * reformats a given number to a string by adding separators at every third digit - * @param {String|Number} inputNumber the input number, can be of type number or string - * @param {String} separator the separator, e.g. ' or , - * @return newString the intersection point, interSectPoint.x contains x-part, interSectPoint.y the y-part of the resulting coordinate - * @type String - * @version 1.0 (2007-04-30) - */ -function formatNumberString(inputNumber,separator) { - //check if of type string, if number, convert it to string - if (typeof(inputNumber) == "Number") { - var myTempString = inputNumber.toString(); - } - else { - var myTempString = inputNumber; - } - var newString=""; - //if it contains a comma, it will be split - var splitResults = myTempString.split("."); - var myCounter = splitResults[0].length; - if (myCounter > 3) { - while(myCounter > 0) { - if (myCounter > 3) { - newString = separator + splitResults[0].substr(myCounter - 3,3) + newString; - } - else { - newString = splitResults[0].substr(0,myCounter) + newString; - } - myCounter -= 3; - } - } - else { - newString = splitResults[0]; - } - //concatenate if it contains a comma - if (splitResults[1]) { - newString = newString + "." + splitResults[1]; - } - return newString; -} - -/** - * writes a status text message out to a SVG text element's first child - * @param {String} statusText the text message to be displayed - * @version 1.0 (2007-04-30) - */ - function statusChange(statusText) { - document.getElementById("statusText").firstChild.nodeValue = "Statusbar: " + statusText; -} - -/** - * scales an SVG element, requires that the element has an x and y attribute (e.g. circle, ellipse, use element, etc.) - * @param {dom::Event} evt the evt object that triggered the scaling - * @param {Number} factor the scaling factor - * @version 1.0 (2007-04-30) - */ -function scaleObject(evt,factor) { - //reference to the currently selected object - var element = evt.currentTarget; - var myX = element.getAttributeNS(null,"x"); - var myY = element.getAttributeNS(null,"y"); - var newtransform = "scale(" + factor + ") translate(" + (myX * 1 / factor - myX) + " " + (myY * 1 / factor - myY) +")"; - element.setAttributeNS(null,'transform', newtransform); -} - -/** - * returns the transformation matrix (ctm) for the given node up to the root element - * the basic use case is to provide a wrapper function for the missing SVGLocatable.getTransformToElement method (missing in ASV3) - * @param {svg::SVGTransformable} node the node reference for the SVGElement the ctm is queried - * @return CTM the current transformation matrix from the given node to the root element - * @type svg::SVGMatrix - * @version 1.0 (2007-05-01) - * @credits <a href="http://www.kevlindev.com/tutorials/basics/transformations/toUserSpace/index.htm">Kevin Lindsey (toUserSpace)</a> - * @see #getTransformToElement - */ -function getTransformToRootElement(node) { - try { - //this part is for fully conformant players (like Opera, Batik, Firefox, Safari ...) - var CTM = node.getTransformToElement(document.documentElement); - } - catch (ex) { - //this part is for ASV3 or other non-conformant players - // Initialize our CTM the node's Current Transformation Matrix - var CTM = node.getCTM(); - // Work our way through the ancestor nodes stopping at the SVG Document - while ( ( node = node.parentNode ) != document ) { - // Multiply the new CTM to the one with what we have accumulated so far - CTM = node.getCTM().multiply(CTM); - } - } - return CTM; -} - -/** - * returns the transformation matrix (ctm) for the given dom::Node up to a different dom::Node - * the basic use case is to provide a wrapper function for the missing SVGLocatable.getTransformToElement method (missing in ASV3) - * @param {svg::SVGTransformable} node the node reference for the element the where the ctm should be calculated from - * @param {svg::SVGTransformable} targetNode the target node reference for the element the ctm should be calculated to - * @return CTM the current transformation matrix from the given node to the target element - * @type svg::SVGMatrix - * @version 1.0 (2007-05-01) - * @credits <a href="http://www.kevlindev.com/tutorials/basics/transformations/toUserSpace/index.htm">Kevin Lindsey (toUserSpace)</a> - * @see #getTransformToRootElement - */ -function getTransformToElement(node,targetNode) { - try { - //this part is for fully conformant players - var CTM = node.getTransformToElement(targetNode); - } - catch (ex) { - //this part is for ASV3 or other non-conformant players - // Initialize our CTM the node's Current Transformation Matrix - var CTM = node.getCTM(); - // Work our way through the ancestor nodes stopping at the SVG Document - while ( ( node = node.parentNode ) != targetNode ) { - // Multiply the new CTM to the one with what we have accumulated so far - CTM = node.getCTM().multiply(CTM); - } - } - return CTM; -} - -/** - * converts HSV to RGB values - * @param {Number} hue the hue value (between 0 and 360) - * @param {Number} sat the saturation value (between 0 and 1) - * @param {Number} val the value value (between 0 and 1) - * @return rgbArr the rgb values (associative array or object, the keys are: red,green,blue), all values are scaled between 0 and 255 - * @type Object - * @version 1.0 (2007-05-01) - * @see #rgb2hsv - */ -function hsv2rgb(hue,sat,val) { - var rgbArr = new Object(); - if ( sat == 0) { - rgbArr["red"] = Math.round(val * 255); - rgbArr["green"] = Math.round(val * 255); - rgbArr["blue"] = Math.round(val * 255); - } - else { - var h = hue / 60; - var i = Math.floor(h); - var f = h - i; - if (i % 2 == 0) { - f = 1 - f; - } - var m = val * (1 - sat); - var n = val * (1 - sat * f); - switch(i) { - case 0: - rgbArr["red"] = val; - rgbArr["green"] = n; - rgbArr["blue"] = m; - break; - case 1: - rgbArr["red"] = n; - rgbArr["green"] = val; - rgbArr["blue"] = m; - break; - case 2: - rgbArr["red"] = m; - rgbArr["green"] = val; - rgbArr["blue"] = n; - break; - case 3: - rgbArr["red"] = m; - rgbArr["green"] = n; - rgbArr["blue"] = val; - break; - case 4: - rgbArr["red"] = n; - rgbArr["green"] = m; - rgbArr["blue"] = val; - break; - case 5: - rgbArr["red"] = val; - rgbArr["green"] = m; - rgbArr["blue"] = n; - break; - case 6: - rgbArr["red"] = val; - rgbArr["green"] = n; - rgbArr["blue"] = m; - break; - } - rgbArr["red"] = Math.round(rgbArr["red"] * 255); - rgbArr["green"] = Math.round(rgbArr["green"] * 255); - rgbArr["blue"] = Math.round(rgbArr["blue"] * 255); - } - return rgbArr; -} - -/** - * converts RGB to HSV values - * @param {Number} red the hue value (between 0 and 255) - * @param {Number} green the saturation value (between 0 and 255) - * @param {Number} blue the value value (between 0 and 255) - * @return hsvArr the hsv values (associative array or object, the keys are: hue (0-360),sat (0-1),val (0-1)) - * @type Object - * @version 1.0 (2007-05-01) - * @see #hsv2rgb - */ -function rgb2hsv(red,green,blue) { - var hsvArr = new Object(); - red = red / 255; - green = green / 255; - blue = blue / 255; - myMax = Math.max(red, Math.max(green,blue)); - myMin = Math.min(red, Math.min(green,blue)); - v = myMax; - if (myMax > 0) { - s = (myMax - myMin) / myMax; - } - else { - s = 0; - } - if (s > 0) { - myDiff = myMax - myMin; - rc = (myMax - red) / myDiff; - gc = (myMax - green) / myDiff; - bc = (myMax - blue) / myDiff; - if (red == myMax) { - h = (bc - gc) / 6; - } - if (green == myMax) { - h = (2 + rc - bc) / 6; - } - if (blue == myMax) { - h = (4 + gc - rc) / 6; - } - } - else { - h = 0; - } - if (h < 0) { - h += 1; - } - hsvArr["hue"] = Math.round(h * 360); - hsvArr["sat"] = s; - hsvArr["val"] = v; - return hsvArr; -} - -/** - * populates an array such that it can be addressed by both a key or an index nr, - * note that both Arrays need to be of the same length - * @param {Array} arrayKeys the array containing the keys - * @param {Array} arrayValues the array containing the values - * @return returnArray the resulting array containing both associative values and also a regular indexed array - * @type Array - * @version 1.0 (2007-05-01) - */ -function arrayPopulate(arrayKeys,arrayValues) { - var returnArray = new Array(); - if (arrayKeys.length != arrayValues.length) { - alert("error: arrays do not have the same length!"); - } - else { - for (i=0;i<arrayKeys.length;i++) { - returnArray[arrayKeys[i]] = arrayValues[i]; - } - } - return returnArray; -} - -/** - * Wrapper object for network requests, uses getURL or XMLHttpRequest depending on availability - * The callBackFunction receives a XML or text node representing the rootElement - * of the fragment received or the return text, depending on the returnFormat. - * See also the following <a href="http://www.carto.net/papers/svg/network_requests/">documentation</a>. - * @class this is a wrapper object to provide network request functionality (get|post) - * @param {String} url the URL/IRI of the network resource to be called - * @param {Function|Object} callBackFunction the callBack function or object that is called after the data was received, in case of an object, the method 'receiveData' is called; both the function and the object's 'receiveData' method get 2 return parameters: 'node.firstChild'|text (the root element of the XML or text resource), this.additionalParams (if defined) - * @param {String} returnFormat the return format, either 'xml' or 'json' (or text) - * @param {String} method the method of the network request, either 'get' or 'post' - * @param {String|Undefined} postText the String containing the post text (optional) or Undefined (if not a 'post' request) - * @param {Object|Array|String|Number|Undefined} additionalParams additional parameters that will be passed to the callBackFunction or object (optional) or Undefined - * @return a new getData instance - * @type getData - * @constructor - * @version 1.0 (2007-02-23) - */ -function getData(url,callBackFunction,returnFormat,method,postText,additionalParams) { - this.url = url; - this.callBackFunction = callBackFunction; - this.returnFormat = returnFormat; - this.method = method; - this.additionalParams = additionalParams; - if (method != "get" && method != "post") { - alert("Error in network request: parameter 'method' must be 'get' or 'post'"); - } - this.postText = postText; - this.xmlRequest = null; //@private reference to the XMLHttpRequest object -} - -/** - * triggers the network request defined in the constructor - */ -getData.prototype.getData = function() { - //call getURL() if available - if (window.getURL) { - if (this.method == "get") { - getURL(this.url,this); - } - if (this.method == "post") { - postURL(this.url,this.postText,this); - } - } - //or call XMLHttpRequest() if available - else if (window.XMLHttpRequest) { - var _this = this; - this.xmlRequest = new XMLHttpRequest(); - if (this.method == "get") { - if (this.returnFormat == "xml") { - this.xmlRequest.overrideMimeType("text/xml"); - } - this.xmlRequest.open("GET",this.url,true); - } - if (this.method == "post") { - this.xmlRequest.open("POST",this.url,true); - } - this.xmlRequest.onreadystatechange = function() {_this.handleEvent()}; - if (this.method == "get") { - this.xmlRequest.send(null); - } - if (this.method == "post") { - //test if postText exists and is of type string - var reallyPost = true; - if (!this.postText) { - reallyPost = false; - alert("Error in network post request: missing parameter 'postText'!"); - } - if (typeof(this.postText) != "string") { - reallyPost = false; - alert("Error in network post request: parameter 'postText' has to be of type 'string')"); - } - if (reallyPost) { - this.xmlRequest.send(this.postText); - } - } - } - //write an error message if neither method is available - else { - alert("your browser/svg viewer neither supports window.getURL nor window.XMLHttpRequest!"); - } -} - -/** - * this is the callback method for the getURL() or postURL() case - * @private - */ -getData.prototype.operationComplete = function(data) { - //check if data has a success property - if (data.success) { - //parse content of the XML format to the variable "node" - if (this.returnFormat == "xml") { - //convert the text information to an XML node and get the first child - var node = parseXML(data.content,document); - //distinguish between a callback function and an object - if (typeof(this.callBackFunction) == "function") { - this.callBackFunction(node.firstChild,this.additionalParams); - } - if (typeof(this.callBackFunction) == "object") { - this.callBackFunction.receiveData(node.firstChild,this.additionalParams); - } - } - if (this.returnFormat == "json") { - if (typeof(this.callBackFunction) == "function") { - this.callBackFunction(data.content,this.additionalParams); - } - if (typeof(this.callBackFunction) == "object") { - this.callBackFunction.receiveData(data.content,this.additionalParams); - } - } - } - else { - alert("something went wrong with dynamic loading of geometry!"); - } -} - -/** - * this is the callback method for the XMLHttpRequest case - * @private - */ -getData.prototype.handleEvent = function() { - if (this.xmlRequest.readyState == 4) { - if (this.returnFormat == "xml") { - //we need to import the XML node first - var importedNode = document.importNode(this.xmlRequest.responseXML.documentElement,true); - if (typeof(this.callBackFunction) == "function") { - this.callBackFunction(importedNode,this.additionalParams); - } - if (typeof(this.callBackFunction) == "object") { - this.callBackFunction.receiveData(importedNode,this.additionalParams); - } - } - if (this.returnFormat == "json") { - if (typeof(this.callBackFunction) == "function") { - this.callBackFunction(this.xmlRequest.responseText,this.additionalParams); - } - if (typeof(this.callBackFunction) == "object") { - this.callBackFunction.receiveData(this.xmlRequest.responseText,this.additionalParams); - } - } - } -} - -/** - * Serializes an XML node and returns a string representation. Wrapper function to hide implementation differences. - * This can be used for debugging purposes or to post data to a server or network resource. - * @param {dom::Node} node the DOM node reference - * @return textRepresentation the String representation of the XML node - * @type String - * @version 1.0 (2007-05-01) - * @see getData - */ -function serializeNode(node) { - if (typeof XMLSerializer != 'undefined') { - return new XMLSerializer().serializeToString(node); - } - else if (typeof node.xml != 'undefined') { - return node.xml; - } - else if (typeof printNode != 'undefined') { - return printNode(node); - } - else if (typeof Packages != 'undefined') { - try { - var stringWriter = new java.io.StringWriter(); - Packages.org.apache.batik.dom.util.DOMUtilities.writeNode(node,stringWriter); - return stringWriter.toString(); - } - catch (e) { - alert("Sorry, your SVG viewer does not support the printNode/serialize function."); - return ''; - } - } - else { - alert("Sorry, your SVG viewer does not support the printNode/serialize function."); - return ''; - } -} - -/** - * Starts a SMIL animation element with the given id by triggering the '.beginElement()' method. - * This is a convenience (shortcut) function. - * @param {String} id a valid id of a valid SMIL animation element - * @version 1.0 (2007-05-01) - */ -//starts an animtion with the given id -//this function is useful in combination with window.setTimeout() -function startAnimation(id) { - document.getElementById(id).beginElement(); -} diff -r cbe28b41fb9d -r e945dcdfd578 static/scripts/timer.js --- a/static/scripts/timer.js Thu Oct 15 10:48:38 2009 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,74 +0,0 @@ -// source/credits: "Algorithm": http://www.codingforums.com/showthread.php?s=&threadid=10531 -// The constructor should be called with -// the parent object (optional, defaults to window). - -function Timer(){ - this.obj = (arguments.length)?arguments[0]:window; - return this; -} - -// The set functions should be called with: -// - The name of the object method (as a string) (required) -// - The millisecond delay (required) -// - Any number of extra arguments, which will all be -// passed to the method when it is evaluated. - -Timer.prototype.setInterval = function(func, msec){ - var i = Timer.getNew(); - var t = Timer.buildCall(this.obj, i, arguments); - Timer.set[i].timer = window.setInterval(t,msec); - return i; -} -Timer.prototype.setTimeout = function(func, msec){ - var i = Timer.getNew(); - Timer.buildCall(this.obj, i, arguments); - Timer.set[i].timer = window.setTimeout("Timer.callOnce("+i+");",msec); - return i; -} - -// The clear functions should be called with -// the return value from the equivalent set function. - -Timer.prototype.clearInterval = function(i){ - if(!Timer.set[i]) return; - window.clearInterval(Timer.set[i].timer); - Timer.set[i] = null; -} -Timer.prototype.clearTimeout = function(i){ - if(!Timer.set[i]) return; - window.clearTimeout(Timer.set[i].timer); - Timer.set[i] = null; -} - -// Private data - -Timer.set = new Array(); -Timer.buildCall = function(obj, i, args){ - var t = ""; - Timer.set[i] = new Array(); - if(obj != window){ - Timer.set[i].obj = obj; - t = "Timer.set["+i+"].obj."; - } - t += args[0]+"("; - if(args.length > 2){ - Timer.set[i][0] = args[2]; - t += "Timer.set["+i+"][0]"; - for(var j=1; (j+2)<args.length; j++){ - Timer.set[i][j] = args[j+2]; - t += ", Timer.set["+i+"]["+j+"]"; - }} - t += ");"; - Timer.set[i].call = t; - return t; -} -Timer.callOnce = function(i){ - if(!Timer.set[i]) return; - eval(Timer.set[i].call); - Timer.set[i] = null; -} -Timer.getNew = function(){ - var i = 0; - while(Timer.set[i]) i++; - return i; -} \ No newline at end of file diff -r cbe28b41fb9d -r e945dcdfd578 static/scripts/tools/rgenetics/checkbox_and_radiobutton.js --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/scripts/tools/rgenetics/checkbox_and_radiobutton.js Thu Oct 15 19:01:07 2009 -0400 @@ -0,0 +1,1 @@ +function checkBox(d,g,m,j,n,l,c,f,k,b,h,o,a){var e=13;var i=true;if(arguments.length==e){this.id=d;this.parentNode=g;this.x=m;this.y=j;this.checkboxId=n;this.checkcrossId=l;this.checkedStatus=c;this.labelText=f;this.textStyles=k;if(!this.textStyles["font-size"]){this.textStyles["font-size"]=12}this.labelDistance=b;this.labelYOffset=h;this.radioButtonGroup=o;this.functionToCall=a;this.exists=true;this.label=undefined}else{i=false;alert("Error in checkbox ("+d+"): wrong nr of arguments! You have to pass over "+e+" parameters.")}if(i){this.timer=new Timer(this);if(this.radioButtonGroup){this.timerMs=0}else{this.timerMs=200}this.createCheckBox()}else{alert("Could not create checkbox with id '"+d+"' due to errors in the constructor parameters")}}checkBox.prototype.createCheckBox=function(){if(typeof(this.parentNode)=="string"){this.parentNode=document.getElementById(this.parentNode)}this.checkBox=document.createElementNS(svgNS,"use");this.checkBox.setAttributeNS(null,"x",this.x); this.checkBox.setAttributeNS(null,"y",this.y);this.checkBox.setAttributeNS(xlinkNS,"href","#"+this.checkboxId);this.checkBox.addEventListener("click",this,false);this.checkBox.setAttributeNS(null,"cursor","pointer");this.parentNode.appendChild(this.checkBox);this.checkCross=document.createElementNS(svgNS,"use");this.checkCross.setAttributeNS(null,"x",this.x);this.checkCross.setAttributeNS(null,"y",this.y);this.checkCross.setAttributeNS(xlinkNS,"href","#"+this.checkcrossId);this.parentNode.appendChild(this.checkCross);if(this.checkedStatus==false){this.checkCross.setAttributeNS(null,"display","none")}if(this.labelText){if(this.labelText.length>0){this.label=document.createElementNS(svgNS,"text");for(var b in this.textStyles){var a=this.textStyles[b];if(b=="font-size"){a+="px"}this.label.setAttributeNS(null,b,a)}this.label.setAttributeNS(null,"x",(this.x+this.labelDistance));this.label.setAttributeNS(null,"y",(this.y+this.labelYOffset));this.label.setAttributeNS(null,"cursor", "pointer");var c=document.createTextNode(this.labelText);this.label.appendChild(c);this.label.setAttributeNS(null,"pointer-events","all");this.label.addEventListener("click",this,false);this.parentNode.appendChild(this.label)}}if(this.radioButtonGroup){this.radioButtonGroup.addCheckBox(this)}};checkBox.prototype.handleEvent=function(a){if(a.type=="click"){if(this.checkedStatus==true){this.checkCross.setAttributeNS(null,"display","none");this.checkedStatus=false}else{this.checkCross.setAttributeNS(null,"display","inline");this.checkedStatus=true}}this.timer.setTimeout("fireFunction",this.timerMs)};checkBox.prototype.fireFunction=function(){if(this.radioButtonGroup){this.radioButtonGroup.selectById(this.id,true)}else{if(typeof(this.functionToCall)=="function"){this.functionToCall(this.id,this.checkedStatus,this.labelText)}if(typeof(this.functionToCall)=="object"){this.functionToCall.checkBoxChanged(this.id,this.checkedStatus,this.labelText)}if(typeof(this.functionToCall)==unde fined){return}}};checkBox.prototype.check=function(a){this.checkCross.setAttributeNS(null,"display","inherit");this.checkedStatus=true;if(a){this.timer.setTimeout("fireFunction",this.timerMs)}};checkBox.prototype.uncheck=function(a){this.checkCross.setAttributeNS(null,"display","none");this.checkedStatus=false;if(a){this.timer.setTimeout("fireFunction",this.timerMs)}};checkBox.prototype.moveTo=function(b,a){this.x=b;this.y=a;this.checkBox.setAttributeNS(null,"x",this.x);this.checkBox.setAttributeNS(null,"y",this.y);this.checkCross.setAttributeNS(null,"x",this.x);this.checkCross.setAttributeNS(null,"y",this.y);if(this.labelText){this.label.setAttributeNS(null,"x",(this.x+this.labelDistance));this.label.setAttributeNS(null,"y",(this.y+this.labelYOffset))}};checkBox.prototype.remove=function(a){this.checkBox.removeEventListener("click",this,false);this.parentNode.removeChild(this.checkBox);this.parentNode.removeChild(this.checkCross);if(this.label){this.parentNode.removeChild(t his.label)}this.exists=false};checkBox.prototype.setLabelText=function(a){this.labelText=a;if(this.label){this.label.firstChild.nodeValue=a}else{if(this.labelText.length>0){this.label=document.createElementNS(svgNS,"text");for(var b in this.textStyles){value=this.textStyles[b];if(b=="font-size"){value+="px"}this.label.setAttributeNS(null,b,value)}this.label.setAttributeNS(null,"x",(this.x+this.labelDistance));this.label.setAttributeNS(null,"y",(this.y+this.textStyles["font-size"]*0.3));var c=document.createTextNode(this.labelText);this.label.appendChild(c);this.parentNode.appendChild(this.label)}}};function radioButtonGroup(c,a){var b=2;if(arguments.length==b){this.id=c;if(typeof(a)=="function"||typeof(a)=="object"||typeof(a)==undefined){this.functionToCall=a}else{alert("Error in radiobutton with ("+c+"): argument functionToCall is not of type 'function', 'object' or undefined!")}this.checkBoxes=new Array();this.selectedId=undefined;this.selectedIndex=undefined;this.timer=ne w Timer(this);this.timerMs=200}else{alert("Error in radiobutton with ("+c+"): wrong nr of arguments! You have to pass over "+b+" parameters.")}}radioButtonGroup.prototype.addCheckBox=function(a){this.checkBoxes.push(a);if(a.checkedStatus){this.selectedId=a.id;this.selectedIndex=this.checkBoxes.length-1}};radioButtonGroup.prototype.selectById=function(c,a){var d=false;for(var b=0;b<this.checkBoxes.length;b++){if(this.checkBoxes[b].id==c){this.selectedId=c;this.selectedIndex=b;if(this.checkBoxes[b].checkedStatus==false){this.checkBoxes[b].check(false)}d=true}else{this.checkBoxes[b].uncheck(false)}}if(d){if(a){this.timer.setTimeout("fireFunction",this.timerMs)}}else{alert("Error in radiobutton with ("+this.id+"): could not find checkbox with id '"+c+"'")}};radioButtonGroup.prototype.selectByLabelname=function(a,b){var d=-1;for(var c=0;c<this.checkBoxes.length;c++){if(this.checkBoxes[c].labelText==a){d=this.checkBoxes[c].id}}if(d==-1){alert("Error in radiobutton with ("+this.id+ "): could not find checkbox with label '"+a+"'")}else{this.selectById(d,b)}};radioButtonGroup.prototype.fireFunction=function(){if(typeof(this.functionToCall)=="function"){this.functionToCall(this.id,this.selectedId,this.checkBoxes[this.selectedIndex].labelText)}if(typeof(this.functionToCall)=="object"){this.functionToCall.radioButtonChanged(this.id,this.selectedId,this.checkBoxes[this.selectedIndex].labelText)}if(typeof(this.functionToCall)==undefined){return}}; \ No newline at end of file diff -r cbe28b41fb9d -r e945dcdfd578 static/scripts/tools/rgenetics/helper_functions.js --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/scripts/tools/rgenetics/helper_functions.js Thu Oct 15 19:01:07 2009 -0400 @@ -0,0 +1,1 @@ +var svgNS="http://www.w3.org/2000/svg%22;var xlinkNS="http://www.w3.org/1999/xlink%22;var cartoNS="http://www.carto.net/attrib%22;var attribNS="http://www.carto.net/attrib%22;var batikNS="http://xml.apache.org/batik/ext%22;function toPolarDir(a,c){var b=(Math.atan2(c,a));return(b)}function toPolarDist(a,b){var c=Math.sqrt(a*a+b*b);return(c)}function toRectX(b,c){var a=c*Math.cos(b);return(a)}function toRectY(a,b){y=b*Math.sin(a);return(y)}function DegToRad(a){return(a/180*Math.PI)}function RadToDeg(a){return(a/Math.PI*180)}function dd2dms(a){var b=(Math.abs(a)-Math.floor(Math.abs(a)))*60;var d=(b-Math.floor(b))*60;var b=Math.floor(b);if(a>=0){var c=Math.floor(a)}else{var c=Math.ceil(a)}return{deg:c,min:b,sec:d}}function dms2dd(c,a,b){if(c<0){return c-(a/60)-(b/3600)}else{return c+(a/60)+(b/3600)}}function log(c,a){if(a==null){a=Math.E}return Math.log(c)/Math.log(a)}function intBilinear(m,k,g,c,o,b,a,u,t){var q=(o-a)/t;var p=(b-u)/t;var n=(1-q)*(1-p);var l=q*(1-p);var j=q*p;var d=p*(1- q);var r=n*g+l*c+j*m+d*k;return r}function leftOfTest(b,j,d,g,c,f){var a=(g-j)*(c-d)-(d-b)*(f-g);if(a<0){var e=1}else{var e=0}return e}function distFromLine(e,f,d,a,c,j){var k=c-d;var g=j-a;var b=(g*(e-d)-k*(f-a))/Math.sqrt(Math.pow(k,2)+Math.pow(g,2));return b}function angleBetwTwoLines(b,a,e,c){var d=Math.acos((b*e+a*c)/(Math.sqrt(Math.pow(b,2)+Math.pow(a,2))*Math.sqrt(Math.pow(e,2)+Math.pow(c,2))));return d}function calcBisectorVector(b,a,g,e){var f=Math.sqrt(Math.pow(b,2)+Math.pow(a,2));var d=Math.sqrt(Math.pow(g,2)+Math.pow(e,2));var j=new Array();j[0]=b/f+g/d;j[1]=a/f+e/d;return j}function calcBisectorAngle(a,k,j,g){var c=Math.sqrt(Math.pow(a,2)+Math.pow(k,2));var b=Math.sqrt(Math.pow(j,2)+Math.pow(g,2));var f=a/c+j/b;var e=k/c+g/b;var d=toPolarDir(f,e);return d}function intersect2lines(l,f,k,e,n,j,m,g){var c=new Object();var d=(g-j)*(k-l)-(m-n)*(e-f);if(d==0){alert("lines are parallel")}else{var b=((m-n)*(f-j)-(g-j)*(l-n))/d;var a=((k-l)*(f-j)-(e-f)*(l-n))/d}c.x=l+b*( k-l);c.y=f+b*(e-f);return c}function formatNumberString(a,e){if(typeof(a)=="Number"){var c=a.toString()}else{var c=a}var b="";var d=c.split(".");var f=d[0].length;if(f>3){while(f>0){if(f>3){b=e+d[0].substr(f-3,3)+b}else{b=d[0].substr(0,f)+b}f-=3}}else{b=d[0]}if(d[1]){b=b+"."+d[1]}return b}function statusChange(a){document.getElementById("statusText").firstChild.nodeValue="Statusbar: "+a}function scaleObject(a,e){var d=a.currentTarget;var c=d.getAttributeNS(null,"x");var b=d.getAttributeNS(null,"y");var f="scale("+e+") translate("+(c*1/e-c)+" "+(b*1/e-b)+")";d.setAttributeNS(null,"transform",f)}function getTransformToRootElement(b){try{var c=b.getTransformToElement(document.documentElement)}catch(a){var c=b.getCTM();while((b=b.parentNode)!=document){c=b.getCTM().multiply(c)}}return c}function getTransformToElement(b,c){try{var d=b.getTransformToElement(c)}catch(a){var d=b.getCTM();while((b=b.parentNode)!=c){d=b.getCTM().multiply(d)}}return d}function hsv2rgb(j,c,b){var l=new Object();if(c==0){l.red=Math.round(b*255);l.green=Math.round(b*255);l.blue=Math.round(b*255)}else{var g=j/60;var e=Math.floor(g);var k=g-e;if(e%2==0){k=1-k}var d=b*(1-c);var a=b*(1-c*k);switch(e){case 0:l.red=b;l.green=a;l.blue=d;break;case 1:l.red=a;l.green=b;l.blue=d;break;case 2:l.red=d;l.green=b;l.blue=a;break;case 3:l.red=d;l.green=a;l.blue=b;break;case 4:l.red=a;l.green=d;l.blue=b;break;case 5:l.red=b;l.green=d;l.blue=a;break;case 6:l.red=b;l.green=a;l.blue=d;break}l.red=Math.round(l.red*255);l.green=Math.round(l.green*255);l.blue=Math.round(l.blue*255)}return l}function rgb2hsv(c,b,a){var d=new Object();c=c/255;b=b/255;a=a/255;myMax=Math.max(c,Math.max(b,a));myMin=Math.min(c,Math.min(b,a));v=myMax;if(myMax>0){s=(myMax-myMin)/myMax}else{s=0}if(s>0){myDiff=myMax-myMin;rc=(myMax-c)/myDiff;gc=(myMax-b)/myDiff;bc=(myMax-a)/myDiff;if(c==myMax){h=(bc-gc)/6}if(b==myMax){h=(2+rc-bc)/6}if(a==myMax){h=(4+gc-rc)/6}}else{h=0}if(h<0){h+=1}d.hue=Math.round(h*360);d.sat=s;d.val=v;ret urn d}function arrayPopulate(a,b){var c=new Array();if(a.length!=b.length){alert("error: arrays do not have the same length!")}else{for(i=0;i<a.length;i++){c[a[i]]=b[i]}}return c}function getData(d,c,e,f,b,a){this.url=d;this.callBackFunction=c;this.returnFormat=e;this.method=f;this.additionalParams=a;if(f!="get"&&f!="post"){alert("Error in network request: parameter 'method' must be 'get' or 'post'")}this.postText=b;this.xmlRequest=null}getData.prototype.getData=function(){if(window.getURL){if(this.method=="get"){getURL(this.url,this)}if(this.method=="post"){postURL(this.url,this.postText,this)}}else{if(window.XMLHttpRequest){var b=this;this.xmlRequest=new XMLHttpRequest();if(this.method=="get"){if(this.returnFormat=="xml"){this.xmlRequest.overrideMimeType("text/xml")}this.xmlRequest.open("GET",this.url,true)}if(this.method=="post"){this.xmlRequest.open("POST",this.url,true)}this.xmlRequest.onreadystatechange=function(){b.handleEvent()};if(this.method=="get"){this.xmlRequest .send(null)}if(this.method=="post"){var a=true;if(!this.postText){a=false;alert("Error in network post request: missing parameter 'postText'!")}if(typeof(this.postText)!="string"){a=false;alert("Error in network post request: parameter 'postText' has to be of type 'string')")}if(a){this.xmlRequest.send(this.postText)}}}else{alert("your browser/svg viewer neither supports window.getURL nor window.XMLHttpRequest!")}}};getData.prototype.operationComplete=function(b){if(b.success){if(this.returnFormat=="xml"){var a=parseXML(b.content,document);if(typeof(this.callBackFunction)=="function"){this.callBackFunction(a.firstChild,this.additionalParams)}if(typeof(this.callBackFunction)=="object"){this.callBackFunction.receiveData(a.firstChild,this.additionalParams)}}if(this.returnFormat=="json"){if(typeof(this.callBackFunction)=="function"){this.callBackFunction(b.content,this.additionalParams)}if(typeof(this.callBackFunction)=="object"){this.callBackFunction.receiveData(b.content,this. additionalParams)}}}else{alert("something went wrong with dynamic loading of geometry!")}};getData.prototype.handleEvent=function(){if(this.xmlRequest.readyState==4){if(this.returnFormat=="xml"){var a=document.importNode(this.xmlRequest.responseXML.documentElement,true);if(typeof(this.callBackFunction)=="function"){this.callBackFunction(a,this.additionalParams)}if(typeof(this.callBackFunction)=="object"){this.callBackFunction.receiveData(a,this.additionalParams)}}if(this.returnFormat=="json"){if(typeof(this.callBackFunction)=="function"){this.callBackFunction(this.xmlRequest.responseText,this.additionalParams)}if(typeof(this.callBackFunction)=="object"){this.callBackFunction.receiveData(this.xmlRequest.responseText,this.additionalParams)}}}};function serializeNode(b){if(typeof XMLSerializer!="undefined"){return new XMLSerializer().serializeToString(b)}else{if(typeof b.xml!="undefined"){return b.xml}else{if(typeof printNode!="undefined"){return printNode(b)}else{if(typeof Pac kages!="undefined"){try{var a=new java.io.StringWriter();Packages.org.apache.batik.dom.util.DOMUtilities.writeNode(b,a);return a.toString()}catch(c){alert("Sorry, your SVG viewer does not support the printNode/serialize function.");return""}}else{alert("Sorry, your SVG viewer does not support the printNode/serialize function.");return""}}}}}function startAnimation(a){document.getElementById(a).beginElement()}; \ No newline at end of file diff -r cbe28b41fb9d -r e945dcdfd578 static/scripts/tools/rgenetics/timer.js --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/scripts/tools/rgenetics/timer.js Thu Oct 15 19:01:07 2009 -0400 @@ -0,0 +1,1 @@ +function Timer(){this.obj=(arguments.length)?arguments[0]:window;return this}Timer.prototype.setInterval=function(c,d){var b=Timer.getNew();var a=Timer.buildCall(this.obj,b,arguments);Timer.set[b].timer=window.setInterval(a,d);return b};Timer.prototype.setTimeout=function(b,c){var a=Timer.getNew();Timer.buildCall(this.obj,a,arguments);Timer.set[a].timer=window.setTimeout("Timer.callOnce("+a+");",c);return a};Timer.prototype.clearInterval=function(a){if(!Timer.set[a]){return}window.clearInterval(Timer.set[a].timer);Timer.set[a]=null};Timer.prototype.clearTimeout=function(a){if(!Timer.set[a]){return}window.clearTimeout(Timer.set[a].timer);Timer.set[a]=null};Timer.set=new Array();Timer.buildCall=function(e,d,b){var c="";Timer.set[d]=new Array();if(e!=window){Timer.set[d].obj=e;c="Timer.set["+d+"].obj."}c+=b[0]+"(";if(b.length>2){Timer.set[d][0]=b[2];c+="Timer.set["+d+"][0]";for(var a=1;(a+2)<b.length;a++){Timer.set[d][a]=b[a+2];c+=", Timer.set["+d+"]["+a+"]"}}c+=");";Timer.set[ d].call=c;return c};Timer.callOnce=function(i){if(!Timer.set[i]){return}eval(Timer.set[i].call);Timer.set[i]=null};Timer.getNew=function(){var a=0;while(Timer.set[a]){a++}return a}; \ No newline at end of file