XML wrapper : use cheetath variable in from_work_dir tag
Hello, I don't know how to use a cheetah variable (#set var) inside a XML tag. I mean when I try to do this : #set foo = "file.txt" ... <outputs> <data format="txt" from_work_dir="something/${foo}" name="test"/> </outputs> from_work_dir tag contains "something/${foo}" instead of "something/file.txt" Is there a way to do this ? Regards Laure
Don’t think you need the { } You may have to do something like this #set foo = “file.txt" <outputs> <data format="txt" from_work_dir=“something/#echo str ( $foo ) #" name="test"/> </outputs> But try it just without the { }. Cheetah is a bitch and note the spaces in the #echo str ( $foo ) # it seems to be important to have them there Regards, Thon [cid:enz_logo_2_new36d101] Thon deBoer Director of Software 3415 Colorado Ave. Room A255 Boulder, CO 80303 Cell: (650) 799-6839 tdeboer@enzymatics.com www.enzymatics.com Enzymatics Inc. Confidentiality Notice: This e-mail and any attachments are confidential, proprietary and or privileged information. It is intended only for the individual(s) to whom it is addressed, and may not be saved, copied, printed, disclosed or used by anyone other than the intended recipient(s). If you are not an intended recipient, please delete this e-mail immediately and notify the sender by e-mail. On Jan 22, 2014, at 7:58 AM, lquintri <Laure.Quintric@ifremer.fr<mailto:Laure.Quintric@ifremer.fr>> wrote: Hello, I don't know how to use a cheetah variable (#set var) inside a XML tag. I mean when I try to do this : #set foo = "file.txt" ... <outputs> <data format="txt" from_work_dir="something/${foo}" name="test"/> </outputs> from_work_dir tag contains "something/${foo}" instead of "something/file.txt" Is there a way to do this ? Regards Laure ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
-
lquintri
-
Thon deBoer