Bug on current history when using prefix in galaxy input file
Hi, I am using the most recent version of Galaxy. There seems to be a bug in viewing the current (active) history when I use prefix in galaxy input file. Here is the detail: When I do not use prefix, e.g., in /config/galaxy.in : prefix = / cookie_path = / and run galaxy server, I can upload a file and I can see my uploaded file in the current history even after I refresh the web browser (e.g., close and reopen the web browser) which seems to be working fine. However when I use prefix, e.g. in /config/galaxy.in : prefix = /galaxy-1/ cookie_path = /galaxy-1/ then after I upload a file and refresh the browser I do not see the uploaded file in the current (or active) history. It always shows me a new (clean history). This is a problem because I get a error which seems to be related to the history when I attempt to run any workflow. Any idea where the problem should be? Please note that I use external authentication but it shouldn't be matter because it is working when the prefix is "/". Thanks a lot, Cheers, Ata ---- Ata Roudgar Research Computing WestGrid Site IT Services Simon Fraser University Burnaby, British Columbia Canada V5A 1S6 phone: 778 782-8860 fax: 778 782-4242
Hi Ata, I'm a little stumped by this one, unable to replicate it here. Out of curiosity, does it work if you remove the trailing slashes from your prefix and cookie_path (when set)? -Dannon On Wed, Jul 15, 2015 at 7:15 PM, Ata Roudgar <aroudgar@sfu.ca> wrote:
Hi,
I am using the most recent version of Galaxy. There seems to be a bug in viewing the current (active) history when I use prefix in galaxy input file.
Here is the detail:
When I do not use prefix, e.g., in /config/galaxy.in :
prefix = / cookie_path = /
and run galaxy server, I can upload a file and I can see my uploaded file in the current history even after I refresh the web browser (e.g., close and reopen the web browser) which seems to be working fine. However when I use prefix, e.g. in /config/galaxy.in :
prefix = /galaxy-1/ cookie_path = /galaxy-1/
then after I upload a file and refresh the browser I do not see the uploaded file in the current (or active) history. It always shows me a new (clean history). This is a problem because I get a error which seems to be related to the history when I attempt to run any workflow.
Any idea where the problem should be?
Please note that I use external authentication but it shouldn't be matter because it is working when the prefix is "/".
Thanks a lot, Cheers, Ata
---- Ata Roudgar Research Computing WestGrid Site IT Services Simon Fraser University Burnaby, British Columbia Canada V5A 1S6
phone: 778 782-8860 fax: 778 782-4242
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Dannon, Thanks for reply. I did a test with other web browser and it seems that this problem persist only when I work with Firefox. With IE or Chrome the problem seems to be disappeared. Thanks again. Cheers, Ata On Wednesday 2015-07-29 16:25, Dannon Baker wrote:
Date: Wed, 29 Jul 2015 16:25:19 From: Dannon Baker <dannon.baker@gmail.com> To: Ata Roudgar <aroudgar@sfu.ca> Cc: "galaxy-dev@lists.galaxyproject.org" <galaxy-dev@lists.galaxyproject.org>, Franklin Bristow <franklin.bristow@phac-aspc.gc.ca>, Matthew Laird <lairdm@sfu.ca> Subject: Re: [galaxy-dev] Bug on current history when using prefix in galaxy input file
Hi Ata,
I'm a little stumped by this one, unable to replicate it here. Out of curiosity, does it work if you remove the trailing slashes from your prefix and cookie_path (when set)?
-Dannon
On Wed, Jul 15, 2015 at 7:15 PM, Ata Roudgar <aroudgar@sfu.ca> wrote:
Hi,
I am using the most recent version of Galaxy. There seems to be a bug in viewing the current (active) history when I use prefix in galaxy input file.
Here is the detail:
When I do not use prefix, e.g., in /config/galaxy.in :
prefix = / cookie_path = /
and run galaxy server, I can upload a file and I can see my uploaded file in the current history even after I refresh the web browser (e.g., close and reopen the web browser) which seems to be working fine. However when I use prefix, e.g. in /config/galaxy.in :
prefix = /galaxy-1/ cookie_path = /galaxy-1/
then after I upload a file and refresh the browser I do not see the uploaded file in the current (or active) history. It always shows me a new (clean history). This is a problem because I get a error which seems to be related to the history when I attempt to run any workflow.
Any idea where the problem should be?
Please note that I use external authentication but it shouldn't be matter because it is working when the prefix is "/".
Thanks a lot, Cheers, Ata
---- Ata Roudgar Research Computing WestGrid Site IT Services Simon Fraser University Burnaby, British Columbia Canada V5A 1S6
phone: 778 782-8860 fax: 778 782-4242
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
---- Ata Roudgar Research Computing WestGrid Site IT Services Simon Fraser University Burnaby, British Columbia Canada V5A 1S6 phone: 778 782-8860 fax: 778 782-4242
Interesting. Can you clear your cache on firefox and try again? Do you see any errors in the web console? On Wed, Jul 29, 2015 at 7:35 PM, Ata Roudgar <aroudgar@sfu.ca> wrote:
Hi Dannon,
Thanks for reply. I did a test with other web browser and it seems that this problem persist only when I work with Firefox. With IE or Chrome the problem seems to be disappeared.
Thanks again. Cheers, Ata
On Wednesday 2015-07-29 16:25, Dannon Baker wrote:
Date: Wed, 29 Jul 2015 16:25:19
From: Dannon Baker <dannon.baker@gmail.com> To: Ata Roudgar <aroudgar@sfu.ca> Cc: "galaxy-dev@lists.galaxyproject.org" < galaxy-dev@lists.galaxyproject.org>, Franklin Bristow <franklin.bristow@phac-aspc.gc.ca>, Matthew Laird <lairdm@sfu.ca> Subject: Re: [galaxy-dev] Bug on current history when using prefix in galaxy input file
Hi Ata,
I'm a little stumped by this one, unable to replicate it here. Out of curiosity, does it work if you remove the trailing slashes from your prefix and cookie_path (when set)?
-Dannon
On Wed, Jul 15, 2015 at 7:15 PM, Ata Roudgar <aroudgar@sfu.ca> wrote:
Hi,
I am using the most recent version of Galaxy. There seems to be a bug in viewing the current (active) history when I use prefix in galaxy input file.
Here is the detail:
When I do not use prefix, e.g., in /config/galaxy.in :
prefix = / cookie_path = /
and run galaxy server, I can upload a file and I can see my uploaded file in the current history even after I refresh the web browser (e.g., close and reopen the web browser) which seems to be working fine. However when I use prefix, e.g. in /config/galaxy.in :
prefix = /galaxy-1/ cookie_path = /galaxy-1/
then after I upload a file and refresh the browser I do not see the uploaded file in the current (or active) history. It always shows me a new (clean history). This is a problem because I get a error which seems to be related to the history when I attempt to run any workflow.
Any idea where the problem should be?
Please note that I use external authentication but it shouldn't be matter because it is working when the prefix is "/".
Thanks a lot, Cheers, Ata
---- Ata Roudgar Research Computing WestGrid Site IT Services Simon Fraser University Burnaby, British Columbia Canada V5A 1S6
phone: 778 782-8860 fax: 778 782-4242
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
---- Ata Roudgar Research Computing WestGrid Site IT Services Simon Fraser University Burnaby, British Columbia Canada V5A 1S6
phone: 778 782-8860 fax: 778 782-4242
participants (2)
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Ata Roudgar
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Dannon Baker