I'm trying to get genetrack working for bed data and when clicking on the 'Genetrack' link for a bed format dataset I get a 500 Internal Server Error django exception from http://genetrack.g2.bx.psu.edu saying 'Unable to validate key!'. Example on our staging server: http://genetrack.g2.bx.psu.edu/galaxy?filename=2f70726f6a6563742f67616c6178792d646174612f66696c65732f3030322f646174617365745f323639322e646174&hashkey=6005bb6978f963d1df79a20a92a3c2f144dbe1ff&input=458&GALAXY_URL=http://dbw-galaxy.msi.umn.edu/tool_runner%3Ftool_id%3Dpredict2genetrack The GALAXY_URL I'm sending it decodes to: http://dbw-galaxy.msi.umn.edu/tool_runner?tool_id=predict2genetrack which redirects (302) to: https://dbw-galaxy.msi.umn.edu/tool_runner?tool_id=predict2genetrack However, I don't see a request for either in the Apache log. Can the genetrack.g2.bx.psu.edu server be used for other galaxy installations as can the UCSC visualizer and I'm running afoul of my redirect and/or https setup, or should I have figured out that I need my own genetrack server from https://bitbucket.org/galaxy/galaxy-central/wiki/ExternalDisplayApplications... ? Thanks, -- Ry4an Brase 612-626-6575 Software Developer Application Development University of Minnesota Supercomputing Institute http://www.msi.umn.edu
Hi Ry4an, You are correct that Galaxy's GeneTrack integration requires running a local instance of GeneTrack. In the case of GeneTrack, files are accessed through a shared file system. I've added a note to clarify this in the wiki. Thanks, Dan On Jan 3, 2011, at 5:47 PM, Ry4an Brase wrote:
I'm trying to get genetrack working for bed data and when clicking on the 'Genetrack' link for a bed format dataset I get a 500 Internal Server Error django exception from http://genetrack.g2.bx.psu.edu saying 'Unable to validate key!'. Example on our staging server:
The GALAXY_URL I'm sending it decodes to:
http://dbw-galaxy.msi.umn.edu/tool_runner?tool_id=predict2genetrack
which redirects (302) to:
https://dbw-galaxy.msi.umn.edu/tool_runner?tool_id=predict2genetrack
However, I don't see a request for either in the Apache log.
Can the genetrack.g2.bx.psu.edu server be used for other galaxy installations as can the UCSC visualizer and I'm running afoul of my redirect and/or https setup, or should I have figured out that I need my own genetrack server from https://bitbucket.org/galaxy/galaxy-central/wiki/ExternalDisplayApplications... ?
Thanks,
-- Ry4an Brase 612-626-6575 Software Developer Application Development University of Minnesota Supercomputing Institute http://www.msi.umn.edu _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
On Mon, Jan 03, 2011 at 09:49:59PM -0500, Daniel Blankenberg wrote:
Hi Ry4an,
You are correct that Galaxy's GeneTrack integration requires running a local instance of GeneTrack. In the case of GeneTrack, files are accessed through a shared file system. I've added a note to clarify this in the wiki.
Thanks for the clarification. I should've figured it out from the shared file access, but the UCSC viewers went in so easily I got overly optimistic. ;) -- Ry4an Brase 612-626-6575 Software Developer Application Development University of Minnesota Supercomputing Institute http://www.msi.umn.edu
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Daniel Blankenberg
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Ry4an Brase