Hello Galaxy Dev, Consider the workflow found in 'Strelka_Workflow_Sequential' image Here it is in a different view 'Strelka_Sequential_Workflow_Different_View' Notice That the first input dataset links to the fetch_interval tool and the first preprocess tool. And the second input dataset links only to the second preprocess tool. When you run the workflow, what actually happens is the first input dataset goes to the fetch_interval tools and the second input dataset goes to both preprocessing tools. (Look at final two images). They have essentially executed the same tool twice. Where it should be an execution with a normal file and an execution with a tumour file. Why is this happening? What can I do to fix this? Thanks, Marco Albuquerque ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/

Well, my Cloudman galaxy instance is installing 15.07 revision 990501d2d9. Is there maybe a different revision I should be using? Marco On Sun, Oct 11, 2015 at 11:03 AM, John Chilton <jmchilton(a)gmail.com&gt; wrote: > > This sounds like it corresponds to this issue > https://github.com/galaxyproject/galaxy/issues/776. Is it possible > that upgrading Galaxy to the latest 15.07 fixes the issue? > > On Thu, Oct 8, 2015 at 7:40 PM, Marco Albuquerque > <marcoalbuquerque.sfu(a)gmail.com&gt; wrote: > > Hello Galaxy Dev, > > > > Consider the workflow found in 'Strelka_Workflow_Sequential' image > > > > Here it is in a different view > > 'Strelka_Sequential_Workflow_Different_View' > > > > Notice That the first input dataset links to the fetch_interval tool and > > the > > first preprocess tool. And the second input dataset links only to the > > second > > preprocess tool. > > > > When you run the workflow, what actually happens is the first input > > dataset > > goes to the fetch_interval tools and the second input dataset goes to > > both > > preprocessing tools. (Look at final two images). They have essentially > > executed the same tool twice. Where it should be an execution with a > > normal > > file and an execution with a tumour file. > > > > Why is this happening? What can I do to fix this? > > > > Thanks, > > > > Marco Albuquerque > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > https://lists.galaxyproject.org/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/

So in other words, there is no release that I can update my cloudman instance to? Marco On Sun, Oct 11, 2015 at 3:49 PM, John Chilton <jmchilton(a)gmail.com&gt; wrote: > > Yeah - release_15.07 is a moving target that bug fixes get added to. > 990501d2d9 doesn't seem to have this fix yet. > > On Sun, Oct 11, 2015 at 5:09 PM, Marco Albuquerque > <marcoalbuquerque.sfu(a)gmail.com&gt; wrote: > > Well, my Cloudman galaxy instance is installing 15.07 revision > > 990501d2d9. > > > > Is there maybe a different revision I should be using? > > > > Marco > > > > On Sun, Oct 11, 2015 at 11:03 AM, John Chilton <jmchilton(a)gmail.com&gt; > > wrote: > >> > >> This sounds like it corresponds to this issue > >> https://github.com/galaxyproject/galaxy/issues/776. Is it possible > >> that upgrading Galaxy to the latest 15.07 fixes the issue? > >> > >> On Thu, Oct 8, 2015 at 7:40 PM, Marco Albuquerque > >> <marcoalbuquerque.sfu(a)gmail.com&gt; wrote: > >> > Hello Galaxy Dev, > >> > > >> > Consider the workflow found in 'Strelka_Workflow_Sequential' image > >> > > >> > Here it is in a different view > >> > 'Strelka_Sequential_Workflow_Different_View' > >> > > >> > Notice That the first input dataset links to the fetch_interval tool > >> > and > >> > the > >> > first preprocess tool. And the second input dataset links only to the > >> > second > >> > preprocess tool. > >> > > >> > When you run the workflow, what actually happens is the first input > >> > dataset > >> > goes to the fetch_interval tools and the second input dataset goes to > >> > both > >> > preprocessing tools. (Look at final two images). They have > >> > essentially > >> > executed the same tool twice. Where it should be an execution with a > >> > normal > >> > file and an execution with a tumour file. > >> > > >> > Why is this happening? What can I do to fix this? > >> > > >> > Thanks, > >> > > >> > Marco Albuquerque > >> > > >> > ___________________________________________________________ > >> > Please keep all replies on the list by using "reply all" > >> > in your mail client. To manage your subscriptions to this > >> > and other Galaxy lists, please use the interface at: > >> > https://lists.galaxyproject.org/ > >> > > >> > To search Galaxy mailing lists use the unified search at: > >> > http://galaxyproject.org/search/mailinglists/ > > > >