No if you update to the latest release_15.07 it should be fixed. I
don't know if CloudMan has an easy way to do that, but you can do it
from the command-line with something like the following commands:
% git fetch --all
% git checkout release_15.07
-John
On Mon, Oct 12, 2015 at 4:09 AM, Marco Albuquerque
<marcoalbuquerque.sfu(a)gmail.com> wrote:
So in other words, there is no release that I can update my cloudman
instance to?
Marco
On Sun, Oct 11, 2015 at 3:49 PM, John Chilton <jmchilton(a)gmail.com> wrote:
>
> Yeah - release_15.07 is a moving target that bug fixes get added to.
> 990501d2d9 doesn't seem to have this fix yet.
>
> On Sun, Oct 11, 2015 at 5:09 PM, Marco Albuquerque
> <marcoalbuquerque.sfu(a)gmail.com> wrote:
> > Well, my Cloudman galaxy instance is installing 15.07 revision
> > 990501d2d9.
> >
> > Is there maybe a different revision I should be using?
> >
> > Marco
> >
> > On Sun, Oct 11, 2015 at 11:03 AM, John Chilton <jmchilton(a)gmail.com>
> > wrote:
> >>
> >> This sounds like it corresponds to this issue
> >>
https://github.com/galaxyproject/galaxy/issues/776. Is it possible
> >> that upgrading Galaxy to the latest 15.07 fixes the issue?
> >>
> >> On Thu, Oct 8, 2015 at 7:40 PM, Marco Albuquerque
> >> <marcoalbuquerque.sfu(a)gmail.com> wrote:
> >> > Hello Galaxy Dev,
> >> >
> >> > Consider the workflow found in 'Strelka_Workflow_Sequential'
image
> >> >
> >> > Here it is in a different view
> >> > 'Strelka_Sequential_Workflow_Different_View'
> >> >
> >> > Notice That the first input dataset links to the fetch_interval tool
> >> > and
> >> > the
> >> > first preprocess tool. And the second input dataset links only to the
> >> > second
> >> > preprocess tool.
> >> >
> >> > When you run the workflow, what actually happens is the first input
> >> > dataset
> >> > goes to the fetch_interval tools and the second input dataset goes to
> >> > both
> >> > preprocessing tools. (Look at final two images). They have
> >> > essentially
> >> > executed the same tool twice. Where it should be an execution with a
> >> > normal
> >> > file and an execution with a tumour file.
> >> >
> >> > Why is this happening? What can I do to fix this?
> >> >
> >> > Thanks,
> >> >
> >> > Marco Albuquerque
> >> >
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> >