Hi, Sorry for delayed reply. When I execute "macs_wrapper.py" on command line, I get the following error. python macs_wrapper.py File "<stdin>", line 1 python macs_wrapper.py Thanks in advance > > On 01/10/2012 06:31 AM, Vidya .H.K wrote: >> Hi, >> I think macs is exceutable with galaxy user. >>> >>> > > what happens if you execute "macs_wrapper.py" on the command line? > > Regards, Hans > > > PS: Please send all follow-up with a cc to the mailing list ("reply-all"). > > >>> On 01/09/2012 05:04 AM, Vidya .H.K wrote: >>>> Hi, >>>> >>>> I am new user to galaxy. I have installed galaxy on the Linux local >>>> server >>>> for ChIP-seq analysis. While running MACS, an error is flagged >>>> "An error occurred running this job: /bin/sh: macs: not found" . >>>> I have set the path for macs in /bin. But still the error persists. It >>>> would be great if any one help me resolve this problem. >>>> >>> >>> Hi Vidya >>> >>> Is macs executable for the galaxy user (ie the user the galaxy server >>> is >>> running as) ? >>> >>> Regards, Hans >>> >>>> Thanks in advance. >>>> >>>> >>>> Regards >>>> vidya >>>> >>>> >>>> >>>> ___________________________________________________________ >>>> Please keep all replies on the list by using "reply all" >>>> in your mail client. To manage your subscriptions to this >>>> and other Galaxy lists, please use the interface at: >>>> >>>> http://lists.bx.psu.edu/ >>> >> >> >> Regards >> H.K.VIDYA >> >> ----------------------------------------- >> Institute of Bioinformatics and Applied Biotechnology, Bangalore >> >