As I wrote in my previous e-mail: "Please send all follow-up with a cc
to the mailing list ("reply-all")."
In order to debug you situation you need to simulate a complete
commandline, the same Galaxy is doing.
Regards, Hans
On 01/23/2012 05:35 AM, Vidya .H.K wrote:
Hi,
Sorry for delayed reply. When I execute "macs_wrapper.py" on command line,
I get the following error.
python macs_wrapper.py
File "<stdin>", line 1
python macs_wrapper.py
Thanks in advance
>
> On 01/10/2012 06:31 AM, Vidya .H.K wrote:
>> Hi,
>> I think macs is exceutable with galaxy user.
>>>
>>>
>
> what happens if you execute "macs_wrapper.py" on the command line?
>
> Regards, Hans
>
>
> PS: Please send all follow-up with a cc to the mailing list ("reply-all").
>
>
>>> On 01/09/2012 05:04 AM, Vidya .H.K wrote:
>>>> Hi,
>>>>
>>>> I am new user to galaxy. I have installed galaxy on the Linux local
>>>> server
>>>> for ChIP-seq analysis. While running MACS, an error is flagged
>>>> "An error occurred running this job: /bin/sh: macs: not
found" .
>>>> I have set the path for macs in /bin. But still the error persists. It
>>>> would be great if any one help me resolve this problem.
>>>>
>>>
>>> Hi Vidya
>>>
>>> Is macs executable for the galaxy user (ie the user the galaxy server
>>> is
>>> running as) ?
>>>
>>> Regards, Hans
>>>
>>>> Thanks in advance.
>>>>
>>>>
>>>> Regards
>>>> vidya
>>>>
>>>>
>>>>
>>>> ___________________________________________________________
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>>>>
>>>>
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>>>
>>
>>
>> Regards
>> H.K.VIDYA
>>
>> -----------------------------------------
>> Institute of Bioinformatics and Applied Biotechnology, Bangalore
>>
>