Hi, I have a tool that takes a zipped archive as input, finds all the sequence files (~90 of them), separates them by barcode, does a little extra processing and outputs a single fasta file. I would like this to run on Galaxy in a workflow with a few other tools. I know there have been discussions about uploading zip files to Galaxy before and that currently Galaxy automatically unzips a file and uploads the first file in the archive. Are there any plans to change this behaviour and be able to upload a zipped file without decompressing. Thanks Shaun -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.
SHAUN WEBB wrote:
Hi,
I have a tool that takes a zipped archive as input, finds all the sequence files (~90 of them), separates them by barcode, does a little extra processing and outputs a single fasta file. I would like this to run on Galaxy in a workflow with a few other tools.
I know there have been discussions about uploading zip files to Galaxy before and that currently Galaxy automatically unzips a file and uploads the first file in the archive. Are there any plans to change this behaviour and be able to upload a zipped file without decompressing.
Hi Shaun, Yes, the plan is to change the behavior, there's an open feature request here: https://bitbucket.org/galaxy/galaxy-central/issue/280/allow-zip-file-uploads --nate
Thanks Shaun
-- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.
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Nate Coraor -
SHAUN WEBB