Oren Livne wrote:
I am running the example_watcher_folder.py API script and it
intermittently fails to run a workflow on a file dropped into the
import directory (the file is imported and the workflow starts
running, but its jobs hang or fail). Galaxy uses a condor dramaa job
runner. When I look at the galaxy script being run by condor, it
sets the PYTHONPATH and then executes the following command, which
also fails at the command line.
Is the intermittent failure the same error was below?
--column=7 --style=num --order=DESC
Traceback (most recent call last):
File "/home/galaxy/galaxy-dist/tools/filters/sorter.py", line 15,
from galaxy import eggs
ImportError: No module named galaxy
This won't work from the command line unless you set PYTHONPATH the same
way that the framework does (i.e. PYTHONPATH=~/galaxy-dist/lib).
How can I resolve this error? I would like to be able to test such
commands at the command line, as well as ensure that galaxy
workflows run reliably.
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