Kevin wrote:

No worries It is through dir server Not sure why it should fail on it's own (unless u mean there's a default timeout). Sure will start up the galaxy instance again to see if it's still running the slow upload. And feedback here again?

Hi Kevin, Are you using PBS, SGE, or another cluster job runner? Otherwise, these jobs should automatically set to the "error" state upon server startup. Are you sure that they actually run (at the command line), or are they just stuck in the "running" state in the library interface? There was a bug fixed a while back that could be preventing these jobs from being set to error upon server startup. If you're running an older revision of Galaxy, I would suggest updating. If you send us which database you're using (just the database type as in SQLite, Postgres, or MySQL, not the database itself), I can send you appropriate SQL to fix the job state. Unfortunately there is no interface in Galaxy to correct these. --nate

Sent from my iPod

On 13-Oct-2010, at 1:23 AM, Jennifer Jackson <jen@bx.psu.edu> wrote:

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Hi Kevin,

Sorry for misunderstanding your question the first time ... you are asking about a library upload (not a dataset).

In this case, you will have to manually change the job state in the database to 'error' to get Galaxy to stop recovering it at start up.

Our developers are curious whether you are using cluster job runner and a URL or server directory upload though, since otherwise the job should have failed on its own. If there is a case through Galaxy's main tools where it doesn't fail, we'd like to track that down if you have time to help.

Thanks again!

Jen Galaxy team

On 10/4/10 6:34 PM, Kevin Lam wrote:

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Hi, I have made a mistake of uploading via file browser a large file through the data library function. How do I cancel it as it resumes upload whenever I start the local instance.

Cheers Kevin

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