details: http://www.bx.psu.edu/hg/galaxy/rev/cec03ea2d5aa changeset: 1545:cec03ea2d5aa user: guru date: Mon Oct 06 09:33:52 2008 -0400 description: Modified help message for indel rate tool. 1 file(s) affected in this change: tools/regVariation/getIndelRates_3way.xml diffs (25 lines): diff -r 7e2ec07716b8 -r cec03ea2d5aa tools/regVariation/getIndelRates_3way.xml --- a/tools/regVariation/getIndelRates_3way.xml Fri Oct 03 16:06:01 2008 -0400 +++ b/tools/regVariation/getIndelRates_3way.xml Mon Oct 06 09:33:52 2008 -0400 @@ -14,8 +14,8 @@ <conditional name="region"> <param name="type" type="select" label="Estimate rates corresponding to" multiple="false"> - <option value="align" selected="True">Alignment block</option> - <option value="win">Intervals in your history</option> + <option value="win" selected="True">Intervals in your history</option> + <option value="align">Alignment block</option> </param> <when value="win"> <param format="interval" name="input2" type="data" label="Choose intervals"> @@ -45,8 +45,8 @@ **What it does** -This tool estimates the insertion and deletion rates for alignments in a window of specified size. - +This tool estimates the insertion and deletion rates for alignments in a window of specified size. Rates are computed over the total adjusted lengths (adjusted by disregarding masked bases) of all the alignments blocks from the indel file that fall within that window. + ----- .. class:: warningmark