Hi Michael,

Did you restart your Galaxy server after updating from Galaxy central? Your paster log shows the following:

...

File '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 1201 in prepare_for_install

description, repository_clone_url, changeset_revision, ctx_rev, repository_owner, tool_dependencies = repo_info_tuple

However, that line no longer exists in the revision to which you've updated, and line 1201 of the admin_toolshed.py file is now:

status = kwd.get( 'status', 'done' )

Greg Von Kuster

On Jan 29, 2013, at 9:03 AM, Waldron, Michael H wrote:

Here is the output from hg heads.

[galaxy@galaxy galaxy-dist]$ hg heads changeset: 8677:22788c1262a2 tag: tip user: jeremy goecks jeremy.goecks@emory.edu date: Mon Jan 28 16:36:02 2013 -0500 summary: Language improvements for tophat wrappers.

changeset: 7987:966a9b393b85 branch: add_requirement_tags_for_plink parent: 7472:06b31a61793c user: Dannon Baker dannonbaker@me.com date: Mon Aug 13 13:23:54 2012 -0400 summary: Branch close

changeset: 7152:ffc20445b35e branch: split_blast2 parent: 7058:22f545c0d412 user: Dannon Baker dannonbaker@me.com date: Wed Apr 18 07:59:38 2012 -0400 summary: Branch close.

changeset: 7151:c94957ac5454 branch: workflow_import_menu_api parent: 6834:1a3d01b09f7a user: Dannon Baker dannonbaker@me.com date: Wed Mar 21 09:50:44 2012 -0400 summary: Branch close for pull request.

changeset: 7150:314a10ae112d branch: split_blast parent: 6757:ebf65c0b1e26 user: Dannon Baker dannonbaker@me.com date: Tue Feb 28 12:32:54 2012 -0500 summary: Close split_blast branch

changeset: 7149:1327f2219423 branch: meme_requirement_on_fimo parent: 6662:8ba74c17e809 user: Daniel Blankenberg dan@bx.psu.edu date: Fri Feb 03 11:15:29 2012 -0500 summary: close branch

Mike Waldron Systems Specialist ITS - Research Computing Center University of North Carolina at Chapel Hill

From: Greg Von Kuster [greg@bx.psu.edu] Sent: Tuesday, January 29, 2013 9:00 AM To: Waldron, Michael H Cc: galaxy-dev@bx.psu.edu Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository

Hi Michael,

The previous post you mention is outdated. The main Galaxy tool shed from which you are pulling has been tracking Galaxy dist for some time now, so you should only have to update to that.

However, the communication layer between Galaxy and the tool shed is backward compatible to the December 20, 2012 Galaxy release, so whether you have updated from Galaxy central or Galaxy dist, you should not be seeing the behavior you describe.

If you do, in fact, track Galaxy central though, and use the main Galaxy tool shed, you may experience some strange behavior because the the development code may include new features that are not available on the main tool shed since it tracks Galaxy dist.

What is the result of typing the following in your Galaxy installation directory?

hg heads

Thanks,

Greg Von Kuster

On Jan 29, 2013, at 8:38 AM, Waldron, Michael H wrote:

...

Users are getting the following error when trying to add a tool from the tool shed repository on our local galaxy instance.

"An error occurred. See the error logs for more information. (Turn debug on to display exception reports here)"

The galaxy server log shows the message included below. The main error is "ValueError: too many values to unpack ". From a similar previous post, the resolution was to use the latest code from Galaxy central. I just ran an "hg pull -u" pointing to galaxy-central (we had been pointing to galaxy-dist), but we still get the same error.

Any ideas?

(server log) [29/Jan/2013:08:19:05 -0400] "GET /admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=f19bc86bac946438&chang... HTTP/1.1" 500 - "http://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?reposito..." "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_6_8) AppleWebKit/534.57.2 (KHTML, like Gecko) Version/5.1.7 Safari/534.57.2" Error - <type 'exceptions.ValueError'>: too many values to unpack URL: https://galaxy.its.unc.edu/admin_toolshed/prepare_for_install?tool_shed_url=... File '/nas02/apps/galaxy-prod/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call__ app_iter = self.application(environ, start_response) File '/nas02/apps/galaxy-prod/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py', line 91 in __call__ return self.app( environ, start_response ) File '/nas02/apps/galaxy-prod/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/web/framework/base.py', line 160 in __call__ body = method( trans, **kwargs ) File '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 206 in decorator return func( self, trans, *args, **kwargs ) File '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 1201 in prepare_for_install description, repository_clone_url, changeset_revision, ctx_rev, repository_owner, tool_dependencies = repo_info_tuple ValueError: too many values to unpack

Mike Waldron Systems Specialist ITS - Research Computing Center University of North Carolina at Chapel Hill

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