Hi Michael,
Did you restart your Galaxy server after updating from Galaxy central? Your paster log
shows the following:
> File
'/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
line 1201 in prepare_for_install
description, repository_clone_url,
changeset_revision, ctx_rev, repository_owner, tool_dependencies = repo_info_tuple
However, that line no longer exists in the revision to which you've updated, and line
1201 of the admin_toolshed.py file is now:
status = kwd.get( 'status', 'done' )
Greg Von Kuster
On Jan 29, 2013, at 9:03 AM, Waldron, Michael H wrote:
> Here is the output from hg heads.
>
> [galaxy@galaxy galaxy-dist]$ hg heads
> changeset: 8677:22788c1262a2
> tag: tip
> user: jeremy goecks <jeremy.goecks(a)emory.edu>
> date: Mon Jan 28 16:36:02 2013 -0500
> summary: Language improvements for tophat wrappers.
>
> changeset: 7987:966a9b393b85
> branch: add_requirement_tags_for_plink
> parent: 7472:06b31a61793c
> user: Dannon Baker <dannonbaker(a)me.com>
> date: Mon Aug 13 13:23:54 2012 -0400
> summary: Branch close
>
> changeset: 7152:ffc20445b35e
> branch: split_blast2
> parent: 7058:22f545c0d412
> user: Dannon Baker <dannonbaker(a)me.com>
> date: Wed Apr 18 07:59:38 2012 -0400
> summary: Branch close.
>
> changeset: 7151:c94957ac5454
> branch: workflow_import_menu_api
> parent: 6834:1a3d01b09f7a
> user: Dannon Baker <dannonbaker(a)me.com>
> date: Wed Mar 21 09:50:44 2012 -0400
> summary: Branch close for pull request.
>
> changeset: 7150:314a10ae112d
> branch: split_blast
> parent: 6757:ebf65c0b1e26
> user: Dannon Baker <dannonbaker(a)me.com>
> date: Tue Feb 28 12:32:54 2012 -0500
> summary: Close split_blast branch
>
> changeset: 7149:1327f2219423
> branch: meme_requirement_on_fimo
> parent: 6662:8ba74c17e809
> user: Daniel Blankenberg <dan(a)bx.psu.edu>
> date: Fri Feb 03 11:15:29 2012 -0500
> summary: close branch
>
>
> Mike Waldron
> Systems Specialist
> ITS - Research Computing Center
> University of North Carolina at Chapel Hill
>
> From: Greg Von Kuster [greg(a)bx.psu.edu]
> Sent: Tuesday, January 29, 2013 9:00 AM
> To: Waldron, Michael H
> Cc: galaxy-dev(a)bx.psu.edu
> Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository
>
> Hi Michael,
>
> The previous post you mention is outdated. The main Galaxy tool shed from which you
are pulling has been tracking Galaxy dist for some time now, so you should only have to
update to that.
>
> However, the communication layer between Galaxy and the tool shed is backward
compatible to the December 20, 2012 Galaxy release, so whether you have updated from
Galaxy central or Galaxy dist, you should not be seeing the behavior you describe.
>
> If you do, in fact, track Galaxy central though, and use the main Galaxy tool shed,
you may experience some strange behavior because the the development code may include new
features that are not available on the main tool shed since it tracks Galaxy dist.
>
> What is the result of typing the following in your Galaxy installation directory?
>
> hg heads
>
> Thanks,
>
> Greg Von Kuster
>
>
> On Jan 29, 2013, at 8:38 AM, Waldron, Michael H wrote:
>
>> Users are getting the following error when trying to add a tool from the tool
shed repository on our local galaxy instance.
>>
>> "An error occurred. See the error logs for more information. (Turn debug on
to display exception reports here)"
>>
>> The galaxy server log shows the message included below. The main error is
"ValueError: too many values to unpack ". From a similar previous post, the
resolution was to use the latest code from Galaxy central. I just ran an "hg pull
-u" pointing to galaxy-central (we had been pointing to galaxy-dist), but we still
get the same error.
>>
>> Any ideas?
>>
>> (server log)
>> [29/Jan/2013:08:19:05 -0400] "GET
/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=f19bc86bac946438&changeset_revisions=2d6671b10919
HTTP/1.1" 500 -
"http://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?repository_id=f19bc86bac946438&changeset_revision=2d6671b10919"
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_6_8) AppleWebKit/534.57.2 (KHTML, like
Gecko) Version/5.1.7 Safari/534.57.2"
>> Error - <type 'exceptions.ValueError'>: too many values to unpack
>> URL:
https://galaxy.its.unc.edu/admin_toolshed/prepare_for_install?tool_shed_u...
>> File
'/nas02/apps/galaxy-prod/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',
line 143 in __call__
>> app_iter = self.application(environ, start_response)
>> File
'/nas02/apps/galaxy-prod/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py',
line 80 in __call__
>> return self.application(environ, start_response)
>> File
'/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py',
line 91 in __call__
>> return self.app( environ, start_response )
>> File
'/nas02/apps/galaxy-prod/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
line 632 in __call__
>> return self.application(environ, start_response)
>> File
'/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/web/framework/base.py', line 160
in __call__
>> body = method( trans, **kwargs )
>> File
'/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/web/framework/__init__.py', line
206 in decorator
>> return func( self, trans, *args, **kwargs )
> File
'/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
line 1201 in prepare_for_install
>> description, repository_clone_url,
changeset_revision, ctx_rev, repository_owner, tool_dependencies = repo_info_tuple
>> ValueError: too many values to unpack
>>
>>
>> Mike Waldron
>> Systems Specialist
>> ITS - Research Computing Center
>> University of North Carolina at Chapel Hill
>>
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client. To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>
>>
http://lists.bx.psu.edu/
>
>