cluster files directory configuration
I have configured custom cluster_files_directory in universe_wsgi.ini file. The cluster jobs are running fine, however job scripts, stdout and stderr are being written in default database/pbs location. Am I missing something in the configuration here? -- Thanks, Shantanu.
On May 19, 2011, at 4:05 PM, Shantanu Pavgi wrote:
I have configured custom cluster_files_directory in universe_wsgi.ini file. The cluster jobs are running fine, however job scripts, stdout and stderr are being written in default database/pbs location. Am I missing something in the configuration here?
Any help on what might be wrong here? Is this option getting overridden by some other config? -- Thanks, Shantanu.
Shantanu Pavgi wrote:
On May 19, 2011, at 4:05 PM, Shantanu Pavgi wrote:
I have configured custom cluster_files_directory in universe_wsgi.ini file. The cluster jobs are running fine, however job scripts, stdout and stderr are being written in default database/pbs location. Am I missing something in the configuration here?
Any help on what might be wrong here? Is this option getting overridden by some other config?
SGE or DRMAA? I think this was broken in the dist version of Galaxy prior to the one just released on Friday - try the latest and let us know if there's still an issue. --nate
-- Thanks, Shantanu.
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On May 25, 2011, at 8:18 AM, Nate Coraor wrote:
Shantanu Pavgi wrote:
On May 19, 2011, at 4:05 PM, Shantanu Pavgi wrote:
I have configured custom cluster_files_directory in universe_wsgi.ini file. The cluster jobs are running fine, however job scripts, stdout and stderr are being written in default database/pbs location. Am I missing something in the configuration here?
Any help on what might be wrong here? Is this option getting overridden by some other config?
SGE or DRMAA? I think this was broken in the dist version of Galaxy prior to the one just released on Friday - try the latest and let us know if there's still an issue.
Well, we are using SGE with drmaa interface (job runner configured with drmaa url). I will check out the latest version sometime soon. Thanks for the update. -- Shantanu.
participants (2)
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Nate Coraor -
Shantanu Pavgi