Yes I can't get the file into galaxy at all. Am uploading from a file path. the file is 35mb. Musa ________________________________________ From: Ry4an Brase [ry4an+galaxy@msi.umn.edu] Sent: Tuesday, March 08, 2011 11:06 PM To: Musa A. Hassan Subject: Re: [galaxy-dev] divide fq into 2 On Tue, Mar 08, 2011 at 10:44:51PM -0500, Musa A. Hassan wrote:
Hi Ry4an,
I'd like to do this in galaxy, but the problem is it wont load into galaxy. As for using split, the file generated from this returns a length mismatch in say Tophat, maybe in the process of splitting the file some changes happen to the format.
So you can't get the file into galaxy at all? Are you trying to upload it through your browser (suitable only for non-huge files) or are you using 'upload from file path'? How big (bytes) is the file. Also, you should try to keep your replies on the mailing list so that other searching in the future find the same help. -- Ry4an Brase 612-626-6575 Software Developer Application Development University of Minnesota Supercomputing Institute http://www.msi.umn.edu
On Tue, Mar 08, 2011 at 11:15:44PM -0500, Musa A. Hassan wrote:
Yes I can't get the file into galaxy at all. Am uploading from a file path. the file is 35mb.
When you say "uploading from a filepath" are you using the administrator-only functionality explained here: https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFile... _not_ the 'Get Data' -> 'Upload File' selection from the 'Tools' menu? People work with files _much_ larger than that in Galaxy all the time.
Musa ________________________________________ From: Ry4an Brase [ry4an+galaxy@msi.umn.edu] Sent: Tuesday, March 08, 2011 11:06 PM To: Musa A. Hassan Subject: Re: [galaxy-dev] divide fq into 2
On Tue, Mar 08, 2011 at 10:44:51PM -0500, Musa A. Hassan wrote:
Hi Ry4an,
I'd like to do this in galaxy, but the problem is it wont load into galaxy. As for using split, the file generated from this returns a length mismatch in say Tophat, maybe in the process of splitting the file some changes happen to the format.
So you can't get the file into galaxy at all? Are you trying to upload it through your browser (suitable only for non-huge files) or are you using 'upload from file path'? How big (bytes) is the file.
Also, you should try to keep your replies on the mailing list so that other searching in the future find the same help.
-- Ry4an Brase 612-626-6575 Software Developer Application Development University of Minnesota Supercomputing Institute http://www.msi.umn.edu
-- Ry4an Brase 612-626-6575 Software Developer Application Development University of Minnesota Supercomputing Institute http://www.msi.umn.edu
participants (2)
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Musa A. Hassan -
Ry4an Brase