tool of installing tool shed repositories
Hi, there: I'm currently trying to migrate all repositories of main tool shed on http://toolshed.g2.bx.psu.edu/ to local, but got some problems. I'm wondering whether there is an existing tool can automatically do the job? thanks rgds, Ray ngsflow@hygenomics.com
Hi Ray, there is some work in that direction to easily import and export repositories. The export feature is already integrated and should help you. You will end up with a tarball with all informations about that repository and the import should be easier. If you want to work on the import part, I think your work is more than welcome! Cheers, Bjoern
Hi, there:
I'm currently trying to migrate all repositories of main tool shed on http://toolshed.g2.bx.psu.edu/ to local, but got some problems.
I'm wondering whether there is an existing tool can automatically do the job?
thanks
rgds, Ray
______________________________________________________________________ ngsflow@hygenomics.com ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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Hello Ray and Björn, I'm currently working on the feature for importing a repository capsule into a Tool Shed. It's been on my plate for a while, but other priorities have side-tracked this work. Based on your exchange, I'm now working to finish up this feature, so it should be available in the next few days. Thanks, Greg Von Kuster On Nov 4, 2013, at 3:46 AM, Björn Grüning <bjoern.gruening@pharmazie.uni-freiburg.de> wrote:
Hi Ray,
there is some work in that direction to easily import and export repositories. The export feature is already integrated and should help you. You will end up with a tarball with all informations about that repository and the import should be easier. If you want to work on the import part, I think your work is more than welcome!
Cheers, Bjoern
Hi, there:
I'm currently trying to migrate all repositories of main tool shed on http://toolshed.g2.bx.psu.edu/ to local, but got some problems.
I'm wondering whether there is an existing tool can automatically do the job?
thanks
rgds, Ray
______________________________________________________________________ ngsflow@hygenomics.com ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hello Ray and Björn, The ability to import an exported repository archive is now available for the web UI in 11261:5c59f2c4f770. I will enhance the Tool Shed API to accomodate this new feature next. This feature is available only in galaxy-central, so it will not be available on the main tool shed until the next Galaxy release. In the mean time, it should be helpful in migrating repositories for local development tool sheds to the test tool shed. If you happened to export a capsule before this changeset, it will not be valid as there was an error in generating the capsule manifest that was corrected in this change set. You can just export the capsule again with this latest changeset. Please let me know if you encounter any issues. Thanks, Greg Von Kuster On Nov 4, 2013, at 10:54 AM, Greg Von Kuster <greg@bx.psu.edu> wrote:
Hello Ray and Björn,
I'm currently working on the feature for importing a repository capsule into a Tool Shed. It's been on my plate for a while, but other priorities have side-tracked this work. Based on your exchange, I'm now working to finish up this feature, so it should be available in the next few days.
Thanks,
Greg Von Kuster
On Nov 4, 2013, at 3:46 AM, Björn Grüning <bjoern.gruening@pharmazie.uni-freiburg.de> wrote:
Hi Ray,
there is some work in that direction to easily import and export repositories. The export feature is already integrated and should help you. You will end up with a tarball with all informations about that repository and the import should be easier. If you want to work on the import part, I think your work is more than welcome!
Cheers, Bjoern
Hi, there:
I'm currently trying to migrate all repositories of main tool shed on http://toolshed.g2.bx.psu.edu/ to local, but got some problems.
I'm wondering whether there is an existing tool can automatically do the job?
thanks
rgds, Ray
______________________________________________________________________ ngsflow@hygenomics.com ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (3)
-
Björn Grüning -
Greg Von Kuster -
ngsflow＠hygenomics.com