Hello, Can any applications in Galaxy use GPU hardware (e.g. for processing next gen data)? Thanks, Isabelle PS: From Enis's reply to a post from last year, it looked like the answer was no at the time On Fri, Dec 10, 2010 at 8:59 PM, <[hidden email]> wrote: ---------------------------- Original Message ---------------------------- Subject: Re: [galaxy-dev] Wiki erratum... From: "Richard Bruskiewich" <[hidden email]> Date: Fri, December 10, 2010 7:17 pm To: "Anton Nekrutenko" <[hidden email]> --------------------------------------------------------------------------
Also, Amazon has so-called "cluster" instances, and now GPU cluster instances. Again, the same idea applies: can specific tools be told to only run on such a cluster instance? Further ahead, could Galaxy be configured to automatically start/stop specific instances only when needed (including cluster instances)? Because MPI-type jobs are the only true beneficiaries of the cluster instances, but only a handful of bioinformatics software are actually implemented using MPI and because those instances require a different AMI, we do not currently have support for that type of instances - maybe down the line. Nonetheless, in the coming new version Galaxy Cloud (currently being tested), the application will be able to automatically scale the size of the cluster based on the current workload.
-- Isabelle Phan, DPhil Seattle Biomedical Research Institute +1(206)256 7113
On Dec 9, 2011, at 5:58 PM, Isabelle Phan wrote:
Hello,
Can any applications in Galaxy use GPU hardware (e.g. for processing next gen data)?
Hi Isabelle, None of the tools bundled in Galaxy currently make use of a GPU because afaik, none of them support it (although there have been some attempts, see: http://seqanswers.com/forums/showthread.php?t=13497 ). If any tool that can run on a GPU is added to Galaxy, it could be scheduled to run on that specific hardware via Galaxy's existing job running mechanisms, however. --nate
Thanks,
Isabelle
PS: From Enis's reply to a post from last year, it looked like the answer was no at the time
On Fri, Dec 10, 2010 at 8:59 PM, <[hidden email]> wrote: ---------------------------- Original Message ---------------------------- Subject: Re: [galaxy-dev] Wiki erratum... From: "Richard Bruskiewich" <[hidden email]> Date: Fri, December 10, 2010 7:17 pm To: "Anton Nekrutenko" <[hidden email]> --------------------------------------------------------------------------
Also, Amazon has so-called "cluster" instances, and now GPU cluster instances. Again, the same idea applies: can specific tools be told to only run on such a cluster instance? Further ahead, could Galaxy be configured to automatically start/stop specific instances only when needed (including cluster instances)? Because MPI-type jobs are the only true beneficiaries of the cluster instances, but only a handful of bioinformatics software are actually implemented using MPI and because those instances require a different AMI, we do not currently have support for that type of instances - maybe down the line. Nonetheless, in the coming new version Galaxy Cloud (currently being tested), the application will be able to automatically scale the size of the cluster based on the current workload.
-- Isabelle Phan, DPhil Seattle Biomedical Research Institute +1(206)256 7113
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participants (2)
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Isabelle Phan -
Nate Coraor