picard_MarkDuplicatesWithMateCigar functional test failure
The functional test for this tool fails. Looking at the XML wrapper, it looks like $comments is invalid....it doesn't exist anywhere else in the xml file. I know that comments can be specified multiple times however there is no way to get the comments fields to appear multiple times in the UI as far as I can tell. So, I changed it from #for $element in $comments: COMMENT="${element.comment}" #end for to COMMENT="${comment}" and the functional test passes.
Hi Ryan, please open a pull request at https://github.com/galaxyproject/tools-devteam The file is in tools/picard/ directory. Thanks, Nicola Il 12.06.2015 17:23 Ryan G ha scritto:
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participants (2)
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Nicola Soranzo
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Ryan G