details: http://www.bx.psu.edu/hg/galaxy/rev/f75758b35e51 changeset: 2495:f75758b35e51 user: Kelly Vincent <kpvincent@bx.psu.edu> date: Thu Jul 23 14:31:11 2009 -0400 description: Fixed for functional tests for new version of fasta_filter_by_length tool contributed by James Casbon. 2 file(s) affected in this change: test-data/fasta_tool_filter_length_1.out tools/fasta_tools/fasta_filter_by_length.xml diffs (108 lines): diff -r 3dae3393e275 -r f75758b35e51 test-data/fasta_tool_filter_length_1.out --- a/test-data/fasta_tool_filter_length_1.out Thu Jul 23 12:38:11 2009 -0400 +++ b/test-data/fasta_tool_filter_length_1.out Thu Jul 23 14:31:11 2009 -0400 @@ -1,61 +1,52 @@

EYKX4VC01B65GS length=54 xy=0784_1754 region=1 run=R_2007_11_07_16_15_57_ -CCGGTATCCGGGTGCCGTGATGAGCGCCACCGGAACGAATTCGACTATGC -CGAA +CCGGTATCCGGGTGCCGTGATGAGCGCCACCGGAACGAATTCGACTATGCCGAA EYKX4VC01BNCSP length=187 xy=0558_3831 region=1 run=R_2007_11_07_16_15_57_ -CTTACCGGTCACCACCGTGCCTTCAGGATTGATCGCCAGATCGGTCGGTG -CGTCAGGCGGGGTGACATCGCCCACCACGGTACTCACTGGCTGGCTCTGG -TTCCCGGCGGCATCGGAGGCCACCACGTTGAGGGTATTCCCCTCGGTTTG -TGGCTCGGTGAGAACCACGTTGTAGTCGCCATTGGTC +CTTACCGGTCACCACCGTGCCTTCAGGATTGATCGCCAGATCGGTCGGTGCGTCAGGCGG +GGTGACATCGCCCACCACGGTACTCACTGGCTGGCTCTGGTTCCCGGCGGCATCGGAGGC +CACCACGTTGAGGGTATTCCCCTCGGTTTGTGGCTCGGTGAGAACCACGTTGTAGTCGCC +ATTGGTC EYKX4VC01CD9FT length=115 xy=0865_1719 region=1 run=R_2007_11_07_16_15_57_ -GGGGGCTTTGGCCTGTCGTCCGGCACCTCGCAAGAGCTACAGCAGGCGCG -GCTGGCGATCATCGGCGGCACGCCGGCCTATATGTCGCCGGAACACACCA -CCCGCACCCAACGCG +GGGGGCTTTGGCCTGTCGTCCGGCACCTCGCAAGAGCTACAGCAGGCGCGGCTGGCGATC +ATCGGCGGCACGCCGGCCTATATGTCGCCGGAACACACCACCCGCACCCAACGCG EYKX4VC01B8FW0 length=95 xy=0799_0514 region=1 run=R_2007_11_07_16_15_57_ -TAAATTTCAAGGAATGCAAATCAGGGTCGTGTGTTTAGACTTCGGCTTTA -GAGACCTGAATACGTCAAAAACATAACTTCATGATATCTTGCAGT +TAAATTTCAAGGAATGCAAATCAGGGTCGTGTGTTTAGACTTCGGCTTTAGAGACCTGAA +TACGTCAAAAACATAACTTCATGATATCTTGCAGT EYKX4VC01BCGYW length=115 xy=0434_3926 region=1 run=R_2007_11_07_16_15_57_ -GGCCAGCCGGGACAGCGTTGTTGGGCTGCATGGCGACGAGCTAAAAGTCG -CCATCACCGCCCCGCCGGTTGATGGGCAGGCTAATGCCCATCTGGTAAAA -ACTTTCTCGCCAAAC +GGCCAGCCGGGACAGCGTTGTTGGGCTGCATGGCGACGAGCTAAAAGTCGCCATCACCGC +CCCGCCGGTTGATGGGCAGGCTAATGCCCATCTGGTAAAAACTTTCTCGCCAAAC EYKX4VC01AZXC6 length=116 xy=0292_0280 region=1 run=R_2007_11_07_16_15_57_ -GGGGGCGTTTGGCCTGTCGTCCGGCACCTCGCAAGAGCTACAGCAGGCGC -GGCTGGCGATCATCGGCGGCACGCCGGCCTATATGTCGCCGGAACACACC -ACCCGCACCCAACGCG +GGGGGCGTTTGGCCTGTCGTCCGGCACCTCGCAAGAGCTACAGCAGGCGCGGCTGGCGAT +CATCGGCGGCACGCCGGCCTATATGTCGCCGGAACACACCACCCGCACCCAACGCG EYKX4VC01CATH5 length=82 xy=0826_0843 region=1 run=R_2007_11_07_16_15_57_ -CGAAATTGCACATTCTCGGCCATATCTCTGGACCTACATGACCGATTTGA -TCATCTTCGAACTTAGCCTTCCTTTNTTAACG +CGAAATTGCACATTCTCGGCCATATCTCTGGACCTACATGACCGATTTGATCATCTTCGA +ACTTAGCCTTCCTTTNTTAACG EYKX4VC01BCEIV length=47 xy=0434_0757 region=1 run=R_2007_11_07_16_15_57_ TGACGTCGTGCCGAGCTACGACAATGCCGACATGGTGATCGTTAACA EYKX4VC01BWERM length=83 xy=0662_0304 region=1 run=R_2007_11_07_16_15_57_ -CGGTCGGCCTCACCATGGAGAAGATCCCGCCCCGGCCGAGGTCATGGTGG -ATCTCGGCCAGGGCGTGCTGATGAAGTTCAAAT +CGGTCGGCCTCACCATGGAGAAGATCCCGCCCCGGCCGAGGTCATGGTGGATCTCGGCCA +GGGCGTGCTGATGAAGTTCAAAT EYKX4VC01BT2O7 length=69 xy=0635_1945 region=1 run=R_2007_11_07_16_15_57_ -AGCGTTTCTCCAGCCGGTCGGCTACGCCGTTTGCCCCTGAAAGACGCTGT -TCAGACCGAACGCGGTAAA +AGCGTTTCTCCAGCCGGTCGGCTACGCCGTTTGCCCCTGAAAGACGCTGTTCAGACCGAA +CGCGGTAAA EYKX4VC01BO0UO length=222 xy=0577_3838 region=1 run=R_2007_11_07_16_15_57_ -AGACCTGGGACAGCGGCGGGCTGCTGAAGCCGCAGGCGATAGAGGACAAA -CTGCAGTACCGCTTCTGGCTGCACTATGCCGAAGGCTCGCTGATGCCGCT -GCTGTTAATGAAGCTGGTGTTCGCCAGCCTGGGTAAACCCCCTGTGCCCT -TTGGCGTCCGCTCGCTGGGCGCCCTGCTGGGCAAGGGCATTCAGAAAGCG -TGGCTGGATCCCCAGCTGGCCA +AGACCTGGGACAGCGGCGGGCTGCTGAAGCCGCAGGCGATAGAGGACAAACTGCAGTACC +GCTTCTGGCTGCACTATGCCGAAGGCTCGCTGATGCCGCTGCTGTTAATGAAGCTGGTGT +TCGCCAGCCTGGGTAAACCCCCTGTGCCCTTTGGCGTCCGCTCGCTGGGCGCCCTGCTGG +GCAAGGGCATTCAGAAAGCGTGGCTGGATCCCCAGCTGGCCA EYKX4VC01CBCPK length=83 xy=0832_1158 region=1 run=R_2007_11_07_16_15_57_ -CGGTCGGCCTCACCATGGAGAAGATCCCGCCCCGGCCGAGGTCATGGTGG -ATCTCGGCCAGGGCGTGCTGATGAAGTTCAAAT +CGGTCGGCCTCACCATGGAGAAGATCCCGCCCCGGCCGAGGTCATGGTGGATCTCGGCCA +GGGCGTGCTGATGAAGTTCAAAT EYKX4VC01B474S length=54 xy=0762_2010 region=1 run=R_2007_11_07_16_15_57_ -AGCAGTTTTCCAGCGCTTTCGAAGAGCGCTGGCGCGCGCGGGCTTCCAGC -ATAT +AGCAGTTTTCCAGCGCTTTCGAAGAGCGCTGGCGCGCGCGGGCTTCCAGCATAT EYKX4VC01BB4QL length=57 xy=0431_0363 region=1 run=R_2007_11_07_16_15_57_ -GGGGAGGAGCTAATAATATGCTCTTGGGGAGGAGCTAATTATATGCTCTT -GGGGAGG +GGGGAGGAGCTAATAATATGCTCTTGGGGAGGAGCTAATTATATGCTCTTGGGGAGG EYKX4VC01BJ37M length=64 xy=0522_0192 region=1 run=R_2007_11_07_16_15_57_ -TCGAGTATGTATCAAGGACTACATACAAATTTGCCAAAAGAGATTATGCA -CTATCCCGACTTCC +TCGAGTATGTATCAAGGACTACATACAAATTTGCCAAAAGAGATTATGCACTATCCCGAC +TTCC EYKX4VC01BV9R8 length=54 xy=0660_2038 region=1 run=R_2007_11_07_16_15_57_ -AAAACTCGGAGAAACTATTCAGCAGCACTGCGTTTCGCTGAATTTTAGAC -CGTT +AAAACTCGGAGAAACTATTCAGCAGCACTGCGTTTCGCTGAATTTTAGACCGTT EYKX4VC01CEPP8 length=60 xy=0870_2350 region=1 run=R_2007_11_07_16_15_57_ -CTGGGTGGGTGCACTACAGGAACGTCATTTGTTCAATCCTCACGTTGTTG -TTAGTGTCAG +CTGGGTGGGTGCACTACAGGAACGTCATTTGTTCAATCCTCACGTTGTTGTTAGTGTCAG EYKX4VC01BTLME length=78 xy=0630_0292 region=1 run=R_2007_11_07_16_15_57_ -TTATCCACACGCTGTCCGGATCCAGCGCCAGGCGCCGACGCTGGACTTCC -GCCGCCTGCGCCCAGTTGCCCTGACTTC +TTATCCACACGCTGTCCGGATCCAGCGCCAGGCGCCGACGCTGGACTTCCGCCGCCTGCG +CCCAGTTGCCCTGACTTC \ No newline at end of file diff -r 3dae3393e275 -r f75758b35e51 tools/fasta_tools/fasta_filter_by_length.xml --- a/tools/fasta_tools/fasta_filter_by_length.xml Thu Jul 23 12:38:11 2009 -0400 +++ b/tools/fasta_tools/fasta_filter_by_length.xml Thu Jul 23 14:31:11 2009 -0400 @@ -1,4 +1,4 @@ -<tool id="fasta_filter_by_length" name="Filter sequences by length"> +<tool id="fasta_filter_by_length" name="Filter sequences by length" version="1.1"> <description></description> <command interpreter="python">fasta_filter_by_length.py $input $min_length $max_length $output </command> <inputs>