Hi, I'm using pbs/torque with galaxy, without any issues. However, I'm not using the drmaa interface, but the pbs-egg. Have you tried that one? See: http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster#pbs_python_egg after scrambling, I just set the following in universe: start_job_runners = pbs default_cluster_job_runner = pbs:/// and optionally per tool configurations: bowtie_wrapper = pbs:///batch/-l nodes=1:ppn=8,mem=2700mb/ bowtie_color_wrapper = pbs:///batch/-l nodes=1:ppn=8,mem=2700mb/ bowtie2 = pbs:///batch/-l nodes=1:ppn=8,mem=2700mb/ tophat = pbs:///batch/-l nodes=1:ppn=8,mem=2700mb/ bwa_wrapper = pbs:///batch/-l nodes=1:ppn=8,mem=3500mb/ I did not set any drmaa-settings ! I also made sure that the galaxy-user was able to submit jobs from the commandline using qsub. geert On 06/01/2012 09:52 AM, Marc Bras wrote:

Hi !!

I've got a problem with PBS when I want to submit a job to our cluster with Galaxy. Every time, PBS says me /*"pbs_submit failed, PBS error 15023: Bad user - no password entry".*/

Indeed, Galaxy uses my email address (used in Galaxy) as user by default ! But, before, when I used SGE on my previous lab, Galaxy used the galaxy owner user and not my email...

Is it possible to set the owner user as previous Galaxy version ? (I found the */"drmaa_external_*"/* session in universe but I don't really understand how to configure this part...).

Thanks a lot,

Best Regards

BRAS Marc

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

-- Geert Vandeweyer, Ph.D. Department of Medical Genetics University of Antwerp Prins Boudewijnlaan 43 2650 Edegem Belgium Tel: +32 (0)3 275 97 56 E-mail: geert.vandeweyer@ua.ac.be http://ua.ac.be/cognitivegenetics http://www.linkedin.com/pub/geert-vandeweyer/26/457/726