Question about dependency management
Greetings, We installed Galaxy at JCVI for internal user but we are discovering that we are missing lots of third party tools/dependencies. My question; is there any script/tool that we can use to checks for all Galaxy dependency software. Also is there any test suite that you guys use to make sure there are no major issues before release. If yes then we can use that test suite to verify our local install and identify any missing dependencies. Thanks again in advance. Regards, Indresh Singh J. Craig Venter Institute(JCVI) 9704 Medical Center Drive Rockville, MD 20850, USA Phone: (301)-795-7129 Fax: (240)-243-0600 www.jcvi.org<http://www.jcvi.org>
Hello Indresh, Apologies for the delay in reply, please see below: On 7/13/11 1:55 PM, Singh, Indresh wrote:
Greetings,
We installed Galaxy at JCVI for internal user but we are discovering that we are missing lots of third party tools/dependencies. My question; is there any script/tool that we can use to checks for all Galaxy dependency software.
Help with installing 3rd party tools can be found at: https://bitbucket.org/afgane/mi-deployment/
Also is there any test suite that you guys use to make sure there are no major issues before release. If yes then we can use that test suite to verify our local install and identify any missing dependencies.
Yes, the functional test suite is designed to do this sort of checking: %sh run_functional_tests.sh Thanks for using Galaxy! Best, Jen Galaxy team
Thanks again in advance.
Regards,
Indresh Singh
J. Craig Venter Institute(JCVI)
9704 Medical Center Drive Rockville, MD 20850, USA
Phone: (301)-795-7129 Fax: (240)-243-0600
www.jcvi.org <http://www.jcvi.org>
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Jennifer Jackson
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Singh, Indresh