On Mon, Mar 26, 2018 at 5:14 AM Leon Parker <lhp_sf4dem(a)sbcglobal.net>
We just stood up our first ever Genomics Virtual Lab appliance and
to spool up a Galaxy Cluster for doing bioinformatics work. We’ve worked a
bit with the original “Cloudman” application and the ver 17.05 revision of
Galaxy and it has worked fine, but we decided it might be a good time to
migrate the GVL platform because it uses the latest, greatest version of
Galaxy and provides additional tools, and the old “cloud man” approach has
been deprecated, giving us further incentive to make the switch.
Unfortunately, we’re encountering an error right out of the gate, when we
spool up Galaxy through GVL, before we do anything with it.
Within two minutes of Galaxy starting, we begin to see the following over
and over again in the Cluster Info Log:
- 20:55:20 - R_COMM channel basic get exception: [Errno 32] Broken pipe
In addition, we can’t seem to access any Spot worker node instances we
activate. They launch but are never recognized and used.
Not sure what this mean, as we are biologists, not informaticians nor
python experts. Any help would be most appreciated!
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