Re: [galaxy-dev] after update unable to login
On Wed, Jan 15, 2014 at 11:30 AM, Briand, Sheldon <Sheldon.Briand@ssc-spc.gc.ca> wrote:
Hi John,
Thanks for getting back to me.
My use_remote_user is set to false. Yes nginx is setup as you suggest. My proxy setup worked before I updated. I have already tested talking to galaxy directly and the problem remains. I meant to mention that in my first message. I tried putting use_pbkdf2 in my configuration file and the galaxy server will not start.
I noticed there is activation code for user accounts in the new the universe_wsgi.ini file. Could this be buggy?
Have you enabled the activation stuff - is user_activation_on set in universe_wsgi.ini? What database are you using. When you added "use_pbkdf2=False" to the configuration file - did you add it to the app:main section? -John
Thanks, -Sheldon
-----Original Message----- From: jmchilton@gmail.com [mailto:jmchilton@gmail.com] On Behalf Of John Chilton Sent: Wednesday, January 15, 2014 11:50 AM To: Briand, Sheldon Subject: Re: [galaxy-dev] after update unable to login
This is unfortunate, sorry about the problems.
There were some changes to the authentication stuff as part of that update - but this is the first report of problems I think. Just to understand your setup - Galaxy is doing the authentication right - ( use_remote_user is not set to true in your universe_wsgi.ini )?
So likely your nginx is setup to proxy requests say from port 80 to 8080 or something like that? Did you configure this? The one thing I would try is to talk to Galaxy directly by pointing your web browser at port localhost:8080 or whatever (you may need to setup SSH tunnels if this is a remote server and not your desktop). I would like to be sure this is a problem with Galaxy and not the nginx configuration - this would confirm that.
If it works to talk to Galaxy directly, somehow your proxy is misconfigured I think - not sure how to resolve that but it would be good to know. Otherwise the problem is with Galaxy's configuration - again not sure how to resolve that but it would be good to know. In this second case, the next I would try is setting use_pbkdf2 to False in universe_wsgi.ini restart and see if you an login then - this shouldn't matter but this problem shouldn't be occurring at all :(.
Let me know if you make any progress.
-John
On Tue, Jan 14, 2014 at 12:20 PM, Briand, Sheldon <Sheldon.Briand@ssc-spc.gc.ca> wrote:
Hi,
I've tried reinstalling from scratch in case there was a problem when I updated the last time. I am still having trouble logging in. The "broken pipe" error message has nothing to do with the failed logins.
The logins are successful as far as authentication goes ( I get no error message, if I put in the wrong password I do get an error message ). However, after login the user is redirected to the last page they were on and does not appear to be logged in (no history, clicking on user gives the login or register options).
If I sent logins so that anonymous logins are not allowed I always get sent back to the login page.
I've looked through the archives for a similar problem and not found anything relevant. I've tried using the stable version of the latest build as well as the development version. No joy on either.
Is there something I've missed?
Thanks,
-Sheldon
From: Briand, Sheldon Sent: Thursday, January 09, 2014 2:26 PM To: 'galaxy-dev@lists.bx.psu.edu' Subject: after update unable to login
Hi,
I had a working local install of galaxy. I wanted to install gatk2 and wasn't able to install it. I upgraded and I am now unable to log in to galaxy.
I should note that I am relatively new to galaxy. I had a previously logged in admin session (before the update). So I am able to see that galaxy (after the update) believes, by checking the manage users admin page, I have newly logged in on another browser. The session, however, shows no indication that I am logged in other than not showing an error. Usually I end up back at the last page I was viewing before I logged in. Clicking on user doesn't show me as logged in, I have no history, and there is no admin tab.
I have a nginx proxy setup.
Paster.log shows a "Broken pipe" error when I login from nginx. I show no error when I log in directly via the galaxy server. The results are the same. I upgraded from database version 115 to version 117.
Is there an easy fix?
Thanks,
-Sheldon
Sheldon Briand
NRC Research Computing Support Analyst
Research Computing Support / Soutien Informartique a la Recherche
Operations, Science Portfolio / Operations, Portefeuil des sciences
SSC-NRC / SPC-CNRC
Rm 329A, 1411 Oxford Street / Piece 329A, 1411 Rue Oxford
Halifax, NS B3H 3Z1
902 426-1677
sheldon.briand@ssc-spc.gc.ca
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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Hi, I double checked directly trying the galaxy process. It turns out I never tried it. I only thought that I had. So it is obviously a config problem or permissions problem with nginx. Since I hadn't changed the nginx config I find that strange. Anyway the problem is between my keyboard and my chair. I'll get it figured out. Thanks for the responses and sorry to waste your time. Cheers, -Sheldon -----Original Message----- From: jmchilton@gmail.com [mailto:jmchilton@gmail.com] On Behalf Of John Chilton Sent: Wednesday, January 15, 2014 4:32 PM To: Briand, Sheldon; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] after update unable to login On Wed, Jan 15, 2014 at 11:30 AM, Briand, Sheldon <Sheldon.Briand@ssc-spc.gc.ca> wrote:
Hi John,
Thanks for getting back to me.
My use_remote_user is set to false. Yes nginx is setup as you suggest. My proxy setup worked before I updated. I have already tested talking to galaxy directly and the problem remains. I meant to mention that in my first message. I tried putting use_pbkdf2 in my configuration file and the galaxy server will not start.
I noticed there is activation code for user accounts in the new the universe_wsgi.ini file. Could this be buggy?
Have you enabled the activation stuff - is user_activation_on set in universe_wsgi.ini? What database are you using. When you added "use_pbkdf2=False" to the configuration file - did you add it to the app:main section? -John
Thanks, -Sheldon
-----Original Message----- From: jmchilton@gmail.com [mailto:jmchilton@gmail.com] On Behalf Of John Chilton Sent: Wednesday, January 15, 2014 11:50 AM To: Briand, Sheldon Subject: Re: [galaxy-dev] after update unable to login
This is unfortunate, sorry about the problems.
There were some changes to the authentication stuff as part of that update - but this is the first report of problems I think. Just to understand your setup - Galaxy is doing the authentication right - ( use_remote_user is not set to true in your universe_wsgi.ini )?
So likely your nginx is setup to proxy requests say from port 80 to 8080 or something like that? Did you configure this? The one thing I would try is to talk to Galaxy directly by pointing your web browser at port localhost:8080 or whatever (you may need to setup SSH tunnels if this is a remote server and not your desktop). I would like to be sure this is a problem with Galaxy and not the nginx configuration - this would confirm that.
If it works to talk to Galaxy directly, somehow your proxy is misconfigured I think - not sure how to resolve that but it would be good to know. Otherwise the problem is with Galaxy's configuration - again not sure how to resolve that but it would be good to know. In this second case, the next I would try is setting use_pbkdf2 to False in universe_wsgi.ini restart and see if you an login then - this shouldn't matter but this problem shouldn't be occurring at all :(.
Let me know if you make any progress.
-John
On Tue, Jan 14, 2014 at 12:20 PM, Briand, Sheldon <Sheldon.Briand@ssc-spc.gc.ca> wrote:
Hi,
I've tried reinstalling from scratch in case there was a problem when I updated the last time. I am still having trouble logging in. The "broken pipe" error message has nothing to do with the failed logins.
The logins are successful as far as authentication goes ( I get no error message, if I put in the wrong password I do get an error message ). However, after login the user is redirected to the last page they were on and does not appear to be logged in (no history, clicking on user gives the login or register options).
If I sent logins so that anonymous logins are not allowed I always get sent back to the login page.
I've looked through the archives for a similar problem and not found anything relevant. I've tried using the stable version of the latest build as well as the development version. No joy on either.
Is there something I've missed?
Thanks,
-Sheldon
From: Briand, Sheldon Sent: Thursday, January 09, 2014 2:26 PM To: 'galaxy-dev@lists.bx.psu.edu' Subject: after update unable to login
Hi,
I had a working local install of galaxy. I wanted to install gatk2 and wasn't able to install it. I upgraded and I am now unable to log in to galaxy.
I should note that I am relatively new to galaxy. I had a previously logged in admin session (before the update). So I am able to see that galaxy (after the update) believes, by checking the manage users admin page, I have newly logged in on another browser. The session, however, shows no indication that I am logged in other than not showing an error. Usually I end up back at the last page I was viewing before I logged in. Clicking on user doesn't show me as logged in, I have no history, and there is no admin tab.
I have a nginx proxy setup.
Paster.log shows a "Broken pipe" error when I login from nginx. I show no error when I log in directly via the galaxy server. The results are the same. I upgraded from database version 115 to version 117.
Is there an easy fix?
Thanks,
-Sheldon
Sheldon Briand
NRC Research Computing Support Analyst
Research Computing Support / Soutien Informartique a la Recherche
Operations, Science Portfolio / Operations, Portefeuil des sciences
SSC-NRC / SPC-CNRC
Rm 329A, 1411 Oxford Street / Piece 329A, 1411 Rue Oxford
Halifax, NS B3H 3Z1
902 426-1677
sheldon.briand@ssc-spc.gc.ca
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
-
Briand, Sheldon -
John Chilton