Hi all,
I'm getting the following error when attempting to do a trackster visualization:
Error: The requested genome file (/vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len) could not be opened. Exiting! Couldn't open /vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len
I found a discussion related to this error online at https://biostar.usegalaxy.org/p/6938/, but I'm unsure what the offered solution actually means in terms of what I need to do. It says " You'll need to set your dataset's database/dbkey to your custom reference genome before you can visualize it". Can someone point me in the right direction to solve this issue?
Thanks in advance,
Scott
Hi Scott
click on the question mark next to 'database' in your history item and set the "Database/Build" to the genome you need.
Regards, Hans-Rudolf
On 09/13/2016 09:11 PM, Scott Szakonyi wrote:
Hi all,
I'm getting the following error when attempting to do a trackster visualization:
Error: The requested genome file (/vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len) could not be opened. Exiting! Couldn't open /vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len
I found a discussion related to this error online at https://biostar.usegalaxy.org/p/6938/, but I'm unsure what the offered solution actually means in terms of what I need to do. It says " You'll need to set your dataset's database/dbkey to your custom reference genome before you can visualize it". Can someone point me in the right direction to solve this issue?
Thanks in advance,
Scott
-- Scott B. Szakonyi Research Programmer
*Center for Research Computing* 107 Information Technology Center Notre Dame, IN 46556 http://crc.nd.edu http://crc.nd.edu/
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Ah, thank you very much, Hans-Rudolf. That did the trick.
Best regards,
Scott
On Wed, Sep 14, 2016 at 6:56 AM, Hans-Rudolf Hotz hrh@fmi.ch wrote:
Hi Scott
click on the question mark next to 'database' in your history item and set the "Database/Build" to the genome you need.
Regards, Hans-Rudolf
On 09/13/2016 09:11 PM, Scott Szakonyi wrote:
Hi all,
I'm getting the following error when attempting to do a trackster visualization:
Error: The requested genome file (/vectorbase/web/Galaxy/galaxy
/tool-data/shared/ucsc/chrom/?.len) could not be opened. Exiting! Couldn't open /vectorbase/web/Galaxy/galaxy/ tool-data/shared/ucsc/chrom/?.len
I found a discussion related to this error online at https://biostar.usegalaxy.org/p/6938/, but I'm unsure what the offered solution actually means in terms of what I need to do. It says " You'll need to set your dataset's database/dbkey to your custom reference genome before you can visualize it". Can someone point me in the right direction to solve this issue?
Thanks in advance,
Scott
-- Scott B. Szakonyi Research Programmer
*Center for Research Computing* 107 Information Technology Center Notre Dame, IN 46556 http://crc.nd.edu http://crc.nd.edu/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
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