Hello,
I am going to move this over to the galaxy-dev list so that the larger development community can more easily access your question and provide some feedback.
Thanks!
Jen Galaxy team
On 8/4/11 12:55 PM, Sridhar A Malkaram wrote:
Hi,
I have been using galaxy succesfully for my work using its internal web-server. Recently I wanted to use it over the internet and so, I configured it with apache at /galaxy of apache's root. I followed all the instructions in setting up the proxy redirection. But I think the re-direction is not happening. I highly appreciate any suggestions to correct the issue.
I checked for the mod_proxy, mod_proxy_http etc modules and they are present and switched on.
Apache gives the following error in its error_log file:
[Thu Aug 04 14:15:56 2011] [error] [client 127.0.0.1] File does not exist: /usr/local/apache/htdocs/galaxy
Galaxy was set up in the directory /home/galaxy/galaxy-dist The lines specific for proxy setting in universe_wsgi.ini are as follows: use = egg:Paste#http port = 8080 host = localhost [filter:proxy-prefix] use = egg:PasteDeploy#prefix prefix = /galaxy [app:main] filter-with = proxy-prefix cookie_path = /galaxy use_remote_user = True remote_user_maildomain = unl.edu http://unl.edu
httpd.conf settings:
RewriteEngine on <Proxy http://localhost:8080%3E Order deny,allow Allow from all
</Proxy> <Location "/galaxy"> Order deny,allow Allow from all # Take the $REMOTE_USER environment variable and set it as a header in the proxy request. RewriteCond %{IS_SUBREQ} ^false$ RewriteCond %{LA-U:REMOTE_USER} (.+) RewriteRule . - [E=RU:%1] RequestHeader set REMOTE_USER %{RU}e RequestHeader set X-URL-SCHEME https RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/(.*) http://localhost:8080/$1 [P] # Compress all uncompressed content. SetOutputFilter DEFLATE SetEnvIfNoCase Request_URI \.(?:gif|jpe?g|png)$ no-gzip dont-vary SetEnvIfNoCase Request_URI \.(?:t?gz|zip|bz2)$ no-gzip dont-vary </Location>
Thanks,
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Your "rewrite" rules are not taking affect (as evident by the fact that apache is looking for a folder named "galaxy" in your document root folder (/usr/local/apache/htdocs/).
First thing to try is to take the "RewriteRules" statements outside the "<location>" block.
Then, enable mod_rewrite logging with the following two statements: RewriteLog /tmp/rewrite.log RewriteLogLevel 9
and restart apache. you'll then see every URL access in "/tmp/rewrite.log", and whether mod_rewrite handled it or not.
-gordon
Jennifer Jackson wrote, On 08/05/2011 11:46 AM:
Hello,
I am going to move this over to the galaxy-dev list so that the larger development community can more easily access your question and provide some feedback.
Thanks!
Jen Galaxy team
On 8/4/11 12:55 PM, Sridhar A Malkaram wrote:
Hi,
I have been using galaxy succesfully for my work using its internal web-server. Recently I wanted to use it over the internet and so, I configured it with apache at /galaxy of apache's root. I followed all the instructions in setting up the proxy redirection. But I think the re-direction is not happening. I highly appreciate any suggestions to correct the issue.
I checked for the mod_proxy, mod_proxy_http etc modules and they are present and switched on.
Apache gives the following error in its error_log file:
[Thu Aug 04 14:15:56 2011] [error] [client 127.0.0.1] File does not exist: /usr/local/apache/htdocs/galaxy
Galaxy was set up in the directory /home/galaxy/galaxy-dist The lines specific for proxy setting in universe_wsgi.ini are as follows: use = egg:Paste#http port = 8080 host = localhost [filter:proxy-prefix] use = egg:PasteDeploy#prefix prefix = /galaxy [app:main] filter-with = proxy-prefix cookie_path = /galaxy use_remote_user = True remote_user_maildomain = unl.edu http://unl.edu
httpd.conf settings:
RewriteEngine on <Proxy http://localhost:8080%3E Order deny,allow Allow from all
</Proxy> <Location "/galaxy"> Order deny,allow Allow from all # Take the $REMOTE_USER environment variable and set it as a header in the proxy request. RewriteCond %{IS_SUBREQ} ^false$ RewriteCond %{LA-U:REMOTE_USER} (.+) RewriteRule . - [E=RU:%1] RequestHeader set REMOTE_USER %{RU}e RequestHeader set X-URL-SCHEME https RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/(.*) http://localhost:8080/$1 [P] # Compress all uncompressed content. SetOutputFilter DEFLATE SetEnvIfNoCase Request_URI \.(?:gif|jpe?g|png)$ no-gzip dont-vary SetEnvIfNoCase Request_URI \.(?:t?gz|zip|bz2)$ no-gzip dont-vary </Location>
Thanks,
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
I moved the RewriteRules statements outside the <location> block and now it is working.
Thank you.
On Fri, Aug 5, 2011 at 11:57 AM, Assaf Gordon gordon@cshl.edu wrote:
Your "rewrite" rules are not taking affect (as evident by the fact that apache is looking for a folder named "galaxy" in your document root folder (/usr/local/apache/htdocs/).
First thing to try is to take the "RewriteRules" statements outside the "<location>" block.
Then, enable mod_rewrite logging with the following two statements: RewriteLog /tmp/rewrite.log RewriteLogLevel 9
and restart apache. you'll then see every URL access in "/tmp/rewrite.log", and whether mod_rewrite handled it or not.
-gordon
Jennifer Jackson wrote, On 08/05/2011 11:46 AM:
Hello,
I am going to move this over to the galaxy-dev list so that the larger
development community can more easily access your question and provide some feedback.
Thanks!
Jen Galaxy team
On 8/4/11 12:55 PM, Sridhar A Malkaram wrote:
Hi,
I have been using galaxy succesfully for my work using its internal web-server. Recently I wanted to use it over the internet and so, I configured it with apache at /galaxy of apache's root. I followed all the instructions in setting up the proxy redirection. But I think the re-direction is not happening. I highly appreciate any suggestions to correct the issue.
I checked for the mod_proxy, mod_proxy_http etc modules and they are present and switched on.
Apache gives the following error in its error_log file:
[Thu Aug 04 14:15:56 2011] [error] [client 127.0.0.1] File does not exist: /usr/local/apache/htdocs/galaxy
Galaxy was set up in the directory /home/galaxy/galaxy-dist The lines specific for proxy setting in universe_wsgi.ini are as
follows:
use = egg:Paste#http port = 8080 host = localhost [filter:proxy-prefix] use = egg:PasteDeploy#prefix prefix = /galaxy [app:main] filter-with = proxy-prefix cookie_path = /galaxy use_remote_user = True remote_user_maildomain = unl.edu http://unl.edu
httpd.conf settings:
RewriteEngine on <Proxy http://localhost:8080%3E Order deny,allow Allow from all
</Proxy> <Location "/galaxy"> Order deny,allow Allow from all # Take the $REMOTE_USER environment variable and set it as a header in the proxy request. RewriteCond %{IS_SUBREQ} ^false$ RewriteCond %{LA-U:REMOTE_USER} (.+) RewriteRule . - [E=RU:%1] RequestHeader set REMOTE_USER %{RU}e RequestHeader set X-URL-SCHEME https RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/(.*) http://localhost:8080/$1 [P] # Compress all uncompressed content. SetOutputFilter DEFLATE SetEnvIfNoCase Request_URI \.(?:gif|jpe?g|png)$ no-gzip
dont-vary
SetEnvIfNoCase Request_URI \.(?:t?gz|zip|bz2)$ no-gzip dont-vary</Location>
Thanks,
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
galaxy-dev@lists.galaxyproject.org
-
Assaf Gordon -
Jennifer Jackson -
Sridhar A Malkaram