Chorny, Ilya wrote:

I get these two error in the log file. The job finishes correctly and a metadata file is created but I still get the error. Can anyone provide me with more detail about what this error means? The second error is incorrect because the files were deleted.

setting metadata externally failed for HistoryDatasetAssociation 344: [Errno 1] Operation not permitted: '/mnt/data/galaxy/database/files/000' and

Failed to cleanup MetadataTempFile temp files from ../../mnt/data/galaxy/database/tmp/metadata_out_HistoryDatasetAssociation_344_NUDu3A: No JSON object could be decoded: line 1 column 0 (char 0)

Hi Ilya, The problem is somewhere in scripts/set_metadata.py. If you 'raise' the exception on line 84 of this script rather than writing it to the metadata results file, you should see a full traceback that reveals the source of the error. --nate

Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.com<mailto:ichorny@illumina.com> Website: www.illumina.com<http://www.illumina.com>

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