You would have my vote too for this, is there a trello card for it?
Stef
----- Original message ----- From: "Lukasse, Pieter"
<pieter.lukasse(a)wur.nl> To: Ross <ross.lazarus(a)gmail.com
Cc: "galaxy-dev(a)lists.bx.psu.edu"
<galaxy-dev(a)lists.bx.psu.edu> Subject:
Re: [galaxy-dev] filtering a <param> of type 'data' so only one type
is available Date: Wed, 22 Oct 2014 11:52:13 +0000
Struggling with this now...you have my vote!
*From:* galaxy-dev-bounces(a)lists.bx.psu.edu
[mailto:galaxy-dev-bounces@lists.bx.psu.edu] *On Behalf Of *Ross *Sent:*
donderdag 24 januari 2013 1:04 *To:* Dan Tenenbaum *Cc:*
galaxy-dev(a)lists.bx.psu.edu *Subject:* Re: [galaxy-dev] filtering a
<param> of type 'data' so only one type is available
Hi, Dan
Glad it worked and thanks for pointing out a more general mimetype -
does any one else (other than me) want to vote to add
<datatype extension="rda" type="galaxy.datatypes.binary:Binary
mimetype="application/x-gzip" subclass="True" /
to datatypes_conf.xml.sample permanently ?
On Thu, Jan 24, 2013 at 10:58 AM, Dan Tenenbaum
<dtenenba(a)fhcrc.org> wrote:
On Wed, Jan 23, 2013 at 3:51 PM, Ross <ross.lazarus(a)gmail.com> wrote:
Hi, Dan.
Using format="rda" will restrict the list to history items
of
the 'rda'
datatype - but ONLY if the rda datatype has been defined!
The easiest way to do that is to define a new datatype in
datatypes_conf.xml
and since rData is binary, you should subclass binary.
Something like (untested - especially the mimetype !)
<datatype extension="rda"
type="galaxy.datatypes.binary:Binary"
mimetype="application/x-rlang-transport"
subclass="True" />
might work. A server restart is always required to load any new
datatypes.
Good luck!
It works! I changed the mime type to application/x-gzip, since
serialized R objects are gzipped.
Thanks,
Dan
On Thu, Jan 24, 2013 at 10:41 AM, Dan Tenenbaum
<dtenenba(a)fhcrc.org> wrote:
>
> Hi,
>
> I have a tool wrapper with a <param> of
type="data".
>
> Currently, this renders as a text box with a drop down list that
has
> 52 items in it (the number of things I have in my history, I
guess).
>
> I'd like to filter this list so that only some items in the
history
> (in my case any item whose name ends with '.rda') are
shown in this
> dropdown.
>
> It seems like maybe the 'format' parameter to the
'param' tag is what
> I want, but:
> 1) I tried format="rda" and that didn't seem to
change anything.
> 2) "rda" is not in the datatypes.conf file which the
documentation
> suggests is required?
>
> (.rda is an extension used for serialized R objects.)
>
> The tool I'm working on only accepts rda files as input and
> the reason
> I'm asking for this is that it is all too easy to
accidentally
> feed it
> a file of some other type. If the dropdown could be filtered so
that
> only items which will work with the tool are shown, that would be
> great.
>
> Is there a way to do that?
> Thanks,
> Dan
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