History/Dataset UUID instead of integer ID?
Hello, I am working with blend4j and bioblend to interact with galaxy. In general, the API seems to require the UUID of a dataset/history, etc. I may be missing something obvious, but I am not finding great ways to obtain this from cheetah substitutions. For example, I can use ${history.id} or ${ output.id} to get the integer ID of that dataset/history. ${output.uuid} is not recognized. I am looking here as a reference: https://github.com/galaxyproject/galaxy/blob/e73d90c94edc63d181c30bd1942918a... https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/model/__init__.p... and would have expected UUID to get exposed in some manner. Is there a standard way to obtain the UUID? Thanks, Ben
blend4j and bioblend for the most part consumes "encoded ids" not UUIDs. The gist from yesterday demonstrates how to generate this encoded id from inside of Galaxy/Cheetah - https://gist.github.com/jmchilton/27c5bb05e155a611294d. UUIDs are newer (in Galaxy terms) than encoded ids and only a few endpoints (mostly related to workflows) currently are capable of consuming them. Lots of objects in Galaxy's models do not have UUIDS include both histories and hdas (the thing which output is). Hope this helps. -John On Wed, May 6, 2015 at 3:14 PM, Ben Bimber <bbimber@gmail.com> wrote:
Hello,
I am working with blend4j and bioblend to interact with galaxy. In general, the API seems to require the UUID of a dataset/history, etc. I may be missing something obvious, but I am not finding great ways to obtain this from cheetah substitutions. For example, I can use ${history.id} or ${output.id} to get the integer ID of that dataset/history. ${output.uuid} is not recognized.
I am looking here as a reference:
https://github.com/galaxyproject/galaxy/blob/e73d90c94edc63d181c30bd1942918a... https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/model/__init__.p...
and would have expected UUID to get exposed in some manner. Is there a standard way to obtain the UUID?
Thanks, Ben
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perfect - somehow overlooked that earlier. thanks again for all the help. -ben On Wed, May 6, 2015 at 12:20 PM, John Chilton <jmchilton@gmail.com> wrote:
blend4j and bioblend for the most part consumes "encoded ids" not UUIDs. The gist from yesterday demonstrates how to generate this encoded id from inside of Galaxy/Cheetah - https://gist.github.com/jmchilton/27c5bb05e155a611294d.
UUIDs are newer (in Galaxy terms) than encoded ids and only a few endpoints (mostly related to workflows) currently are capable of consuming them. Lots of objects in Galaxy's models do not have UUIDS include both histories and hdas (the thing which output is).
Hope this helps.
-John
On Wed, May 6, 2015 at 3:14 PM, Ben Bimber <bbimber@gmail.com> wrote:
Hello,
I am working with blend4j and bioblend to interact with galaxy. In general, the API seems to require the UUID of a dataset/history, etc. I may be missing something obvious, but I am not finding great ways to obtain this from cheetah substitutions. For example, I can use ${history.id} or ${output.id} to get the integer ID of that dataset/history. ${output.uuid} is not recognized.
I am looking here as a reference:
https://github.com/galaxyproject/galaxy/blob/e73d90c94edc63d181c30bd1942918a...
https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/model/__init__.p...
and would have expected UUID to get exposed in some manner. Is there a standard way to obtain the UUID?
Thanks, Ben
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
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Ben Bimber -
John Chilton