On Fri, Feb 1, 2013 at 8:41 AM, Stephen Groenewold sgroenewold@idtdna.com wrote:
We’ve installed a local instance of Galaxy and are having trouble with the first step of uploading files. The only thing that will currently upload is text pasted into the URL/Text box.
Any attempt to upload a file using the Browse File box not only fails, it never even starts. It’s as if the Execute button is disabled.
I’ve tried changing the ajax-upload parameter to “false” in tools/data_source/upload.xml (as mentioned in a workaround posted to the list by Daniel Blankenburg in Aug 2012). I’ve also tried using different browsers (including Internet Explorer) and going the route of Adding Data Libraries as Admin. None of those attempts have worked.
Am I missing a configuration setup? Could there be permissions issues on the Galaxy machine?
This sounds like the same issue I've reported to this list, which Carl and others have been kind enough to look at. I think their look is still in progress but hopefully there will be some news about it soon. Here is that thread:
http://dev.list.galaxyproject.org/error-uploading-file-with-fresh-installati...
Dan
Thanks.
Steve
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We've also seen that same error in our startup log:
======================
Traceback (most recent call last): File "/Users/dtenenba/dev/galaxy-dist/lib/galaxy/jobs/handler.py", line 447, in _load_plugin module = __import__( module_name ) File "/Users/dtenenba/dev/galaxy-dist/lib/galaxy/jobs/runners/lwr.py", line 232 worker = threading.Thread( ( name="LwrJobRunner.thread-%d" % i ), target=self.run_next ) ^ SyntaxError: invalid syntax
=======================
And we are also having trouble uploading files. Originally, even attempts to add files via the Admin Data Libraries process wouldn't work. That seems to have been resolved (coincidentally? or causally?) after another user completed a general upload via a URL.
But even now, uploading a specific file with the Get Data -> Upload File process is still non-responsive. Either the Execute button never does anything at all, or the upload process appears in History and turns blue but never completes.
-----Original Message----- From: Dan Tenenbaum [mailto:dtenenba@fhcrc.org] Sent: Friday, February 01, 2013 3:14 PM To: Stephen Groenewold Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] File Upload doesn't generate any activity
On Fri, Feb 1, 2013 at 8:41 AM, Stephen Groenewold sgroenewold@idtdna.com wrote:
We've installed a local instance of Galaxy and are having trouble with the first step of uploading files. The only thing that will currently upload is text pasted into the URL/Text box.
Any attempt to upload a file using the Browse File box not only fails, it never even starts. It's as if the Execute button is disabled.
I've tried changing the ajax-upload parameter to "false" in tools/data_source/upload.xml (as mentioned in a workaround posted to the list by Daniel Blankenburg in Aug 2012). I've also tried using different browsers (including Internet Explorer) and going the route of Adding Data Libraries as Admin. None of those attempts have worked.
Am I missing a configuration setup? Could there be permissions issues on the Galaxy machine?
This sounds like the same issue I've reported to this list, which Carl and others have been kind enough to look at. I think their look is still in progress but hopefully there will be some news about it soon. Here is that thread:
http://dev.list.galaxyproject.org/error-uploading-file-with-fresh-installati...
Dan
Thanks.
Steve
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
galaxy-dev@lists.galaxyproject.org
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Dan Tenenbaum -
Stephen Groenewold