Bug report for uploading tool updates to Tool Shed
Hi all, I have an already approved tool on the Tool Shed, TMHMM and SignalP suite version 0.0.1 I uploaded a new tar ball for version 0.0.2, but did not click approve - I realised I needed to update the REAME file. So I deleted this update. [Note the UI could be clearer about what delete does, thankfully it did not delete the original approved version as well.] This aborted update now shows under "Browse your tools" with status "deleted". I now tried to upload a revised tar ball for version 0.0.2, but it complains "The new version (0.0.2) matches an old version. Check your version in the tool suite config file." The version it matches is the deleted one (my aborted 0.0.2 update). I would expect the version check to ignore deleted tools. Can this be changed? Thanks, Peter
On Mon, Nov 22, 2010 at 11:18 AM, Peter <peter@maubp.freeserve.co.uk> wrote:
Hi all,
I have an already approved tool on the Tool Shed, TMHMM and SignalP suite version 0.0.1
I uploaded a new tar ball for version 0.0.2, but did not click approve - I realised I needed to update the REAME file. So I deleted this update. [Note the UI could be clearer about what delete does, thankfully it did not delete the original approved version as well.] This aborted update now shows under "Browse your tools" with status "deleted".
I now tried to upload a revised tar ball for version 0.0.2, but it complains "The new version (0.0.2) matches an old version. Check your version in the tool suite config file." The version it matches is the deleted one (my aborted 0.0.2 update).
I would expect the version check to ignore deleted tools. Can this be changed?
Thanks,
Peter
Hi, I colleague was just trying to download my tool wrappers, and couldn't find them. I can still see "TMHMM and SignalP" suite v0.0.1 listed as approved under "Browse your tools", but it is missing from both "Browse by category" and "Browse all tools". Is this a consequence of my deleting my aborted v0.0.2 upload? Also, the category "Tools for performing Protien and DNA/RNA analysis" has a typo (protein). Thanks Peter
Hi Peter, On Nov 23, 2010, at 5:09 AM, Peter wrote:
On Mon, Nov 22, 2010 at 11:18 AM, Peter <peter@maubp.freeserve.co.uk> wrote:
Hi,
I colleague was just trying to download my tool wrappers, and couldn't find them. I can still see "TMHMM and SignalP" suite v0.0.1 listed as approved under "Browse your tools", but it is missing from both "Browse by category" and "Browse all tools". Is this a consequence of my deleting my aborted v0.0.2 upload?
Yes, you uncovered a bug or 2 that I've fixed. The older approved version of your TMHMM and SignalIP suite should now be visible. As this is still in beta ( although we're probably approaching the end of this phase ), any issues you report are greatly appreciated and will be corrected as soon as possible.
Also, the category "Tools for performing Protien and DNA/RNA analysis" has a typo (protein).
I fixed this problem as well, thanks for pointing it out.
Thanks
Peter _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
On Tue, Nov 23, 2010 at 8:22 PM, Greg Von Kuster <greg@bx.psu.edu> wrote:
Hi Peter,
Yes, you uncovered a bug or 2 that I've fixed. The older approved version of your TMHMM and SignalIP suite should now be visible. As this is still in beta ( although we're probably approaching the end of this phase ), any issues you report are greatly appreciated and will be corrected as soon as possible.
Great - yes, I can see v0.0.1 again now. This afternoon I made a couple more changes and upload v0.0.3 of the tool suite, which should now be pending approval. One minor point, on uploading an update, why doesn't Galaxy preselect tool versus suite for me?
Also, the category "Tools for performing Protien and DNA/RNA analysis" has a typo (protein).
I fixed this problem as well, thanks for pointing it out.
Thanks Greg, Peter
On Nov 23, 2010, at 3:46 PM, Peter wrote:
Great - yes, I can see v0.0.1 again now.
This afternoon I made a couple more changes and upload v0.0.3 of the tool suite, which should now be pending approval.
Just approved it, thanks!
One minor point, on uploading an update, why doesn't Galaxy preselect tool versus suite for me?
Thanks for pointing this out - let's just say this is the next feature enhancement. ;)
Peter
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
This issue has been corrected in the Galaxy tool shed. On Nov 23, 2010, at 3:50 PM, Greg Von Kuster wrote:
On Nov 23, 2010, at 3:46 PM, Peter wrote:
One minor point, on uploading an update, why doesn't Galaxy preselect tool versus suite for me?
Thanks for pointing this out - let's just say this is the next feature enhancement. ;)
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
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