testtoolshed : python-2.7 installation error
Hi, I get an installation error on the python 2.7 package in the test toolshed. I used the 'contact owner' function, but wanted to mention it here too, as there hasn't been reaction so far. Sorry for double posting if so. Error: tar (child): 5.2.tar.bz2: Cannot open: No such file or directory A similar error is in the Test run outputs. I believe it is related to the following (unnecessary) line in the tool_dependency.xml: <action type="change_directory">..</action> located just after the download_file action for the 5.2.tar.bz2 file. Best, Geert -- Geert Vandeweyer, Ph.D. Department of Medical Genetics University of Antwerp Prins Boudewijnlaan 43 2650 Edegem Belgium Tel: +32 (0)3 275 97 56 E-mail: geert.vandeweyer@ua.ac.be http://ua.ac.be/cognitivegenetics http://www.linkedin.com/in/geertvandeweyer
Hi Geert, Which tool is this? Peter On Thu, Aug 7, 2014 at 9:00 AM, Geert Vandeweyer <geert.vandeweyer2@uantwerpen.be> wrote:
Hi,
I get an installation error on the python 2.7 package in the test toolshed. I used the 'contact owner' function, but wanted to mention it here too, as there hasn't been reaction so far. Sorry for double posting if so.
Error:
tar (child): 5.2.tar.bz2: Cannot open: No such file or directory
A similar error is in the Test run outputs. I believe it is related to the following (unnecessary) line in the tool_dependency.xml:
<action type="change_directory">..</action>
located just after the download_file action for the 5.2.tar.bz2 file.
Best,
Geert
--
Geert Vandeweyer, Ph.D. Department of Medical Genetics University of Antwerp Prins Boudewijnlaan 43 2650 Edegem Belgium Tel: +32 (0)3 275 97 56 E-mail: geert.vandeweyer@ua.ac.be http://ua.ac.be/cognitivegenetics http://www.linkedin.com/in/geertvandeweyer
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Hi Geert, are you talking about the package_python_* repository? Am 07.08.2014 um 10:00 schrieb Geert Vandeweyer:
Hi,
I get an installation error on the python 2.7 package in the test toolshed. I used the 'contact owner' function, but wanted to mention it here too, as there hasn't been reaction so far. Sorry for double posting if so.
Oh this is interesting, because we did not get notified. It is from IUC correct?
Error:
tar (child): 5.2.tar.bz2: Cannot open: No such file or directory
A similar error is in the Test run outputs. I believe it is related to the following (unnecessary) line in the tool_dependency.xml:
<action type="change_directory">..</action>
This can be. The cwd directory handling changed a lot in recent versions, due to bugs. And for a few repositories we still have the workarounds included. I will upload a new version without this workaround and see if it passes.
located just after the download_file action for the 5.2.tar.bz2 file.
Best,
Geert
sorry about that confusion :-) Yes, I'm talking about the package_python_2.7 repository. The same error is also present in the test runs of the package_python_3* repo. Best, Geert On 08/07/2014 11:45 AM, Björn Grüning wrote:
Hi Geert,
are you talking about the package_python_* repository?
Am 07.08.2014 um 10:00 schrieb Geert Vandeweyer:
Hi,
I get an installation error on the python 2.7 package in the test toolshed. I used the 'contact owner' function, but wanted to mention it here too, as there hasn't been reaction so far. Sorry for double posting if so.
Oh this is interesting, because we did not get notified. It is from IUC correct?
Error:
tar (child): 5.2.tar.bz2: Cannot open: No such file or directory
A similar error is in the Test run outputs. I believe it is related to the following (unnecessary) line in the tool_dependency.xml:
<action type="change_directory">..</action>
This can be. The cwd directory handling changed a lot in recent versions, due to bugs. And for a few repositories we still have the workarounds included.
I will upload a new version without this workaround and see if it passes.
located just after the download_file action for the 5.2.tar.bz2 file.
Best,
Geert
-- Geert Vandeweyer, Ph.D. Department of Medical Genetics University of Antwerp Prins Boudewijnlaan 43 2650 Edegem Belgium Tel: +32 (0)3 275 97 56 E-mail: geert.vandeweyer@ua.ac.be http://ua.ac.be/cognitivegenetics http://www.linkedin.com/in/geertvandeweyer
Hi, I updated the python wrappers. Depending on your Galaxy version it should work now. @Greg, we still have the error that 'contact owner' does not seem to work :( Cheers, Bjoern Am 07.08.2014 um 12:11 schrieb Geert Vandeweyer:
sorry about that confusion :-)
Yes, I'm talking about the package_python_2.7 repository. The same error is also present in the test runs of the package_python_3* repo.
Best,
Geert
On 08/07/2014 11:45 AM, Björn Grüning wrote:
Hi Geert,
are you talking about the package_python_* repository?
Am 07.08.2014 um 10:00 schrieb Geert Vandeweyer:
Hi,
I get an installation error on the python 2.7 package in the test toolshed. I used the 'contact owner' function, but wanted to mention it here too, as there hasn't been reaction so far. Sorry for double posting if so.
Oh this is interesting, because we did not get notified. It is from IUC correct?
Error:
tar (child): 5.2.tar.bz2: Cannot open: No such file or directory
A similar error is in the Test run outputs. I believe it is related to the following (unnecessary) line in the tool_dependency.xml:
<action type="change_directory">..</action>
This can be. The cwd directory handling changed a lot in recent versions, due to bugs. And for a few repositories we still have the workarounds included.
I will upload a new version without this workaround and see if it passes.
located just after the download_file action for the 5.2.tar.bz2 file.
Best,
Geert
participants (3)
-
Björn Grüning -
Geert Vandeweyer -
Peter Cock