Hi Fabien,

I'm having trouble reproducing this error on my side. In the trace it looks like the error is being thrown at the collection view (/api/quotas) and not the detail view (/api/quotas/f597429621d6eb2b or the like). Is that true?

Can you show me the exact configuration of this quota in the admin panel?

On Tue, Mar 8, 2016 at 8:10 AM, Fabien Mareuil fmareuil@pasteur.fr wrote:

Hi,

We got an error when we used API to see a quota detail, we get the following traceback:

157.99.60.167 - - [08/Mar/2016:10:13:58 +0200] "GET /api/quotas HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:44.0) Gecko/20100101 Firefox/44.0" galaxy.web.framework.decorators ERROR 2016-03-08 10:14:10,273 Uncaught exception in exposed API method: Traceback (most recent call last): File ".../lib/galaxy/web/framework/decorators.py", line 142, in decorator rval = dumps( rval, indent=4, sort_keys=True ) File ".../lib/galaxy/util/json.py", line 65, in safe_dumps dumped = json.dumps( *args, allow_nan=False, **kwargs ) File "/usr/lib64/python2.6/json/__init__.py", line 237, in dumps **kw).encode(obj) File "/usr/lib64/python2.6/json/encoder.py", line 367, in encode chunks = list(self.iterencode(o)) File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 306, in _iterencode for chunk in self._iterencode_list(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 204, in _iterencode_list for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 317, in _iterencode for chunk in self._iterencode_default(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 323, in _iterencode_default newobj = self.default(o) File "/usr/lib64/python2.6/json/encoder.py", line 344, in default raise TypeError(repr(o) + " is not JSON serializable") TypeError: Decimal('856488698767') is not JSON serializable

json can't serialize Decimal object. I tested it with simplejson and it works. An other solution is to convert the Decimal object to a float before the dumps.

Thanks a lot for your help Best regards,

-- Fabien Mareuil | Centre d'Informatique pour la Biologie fabien.mareuil@pasteur.fr | Institut Pasteur 25,28 rue du Docteur Roux 75015 Paris, France

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Fabien,

Thanks for the patch. I've opened a PR applying it in https://github.com/galaxyproject/galaxy/pull/1898. I'm thinking we might want to eventually refactor a little and add more general support for Decimal serialization, perhaps in the 'safe_dumps' machinery in galaxy.util.json, but this looks good to me for now.

On Tue, Mar 8, 2016 at 12:42 PM, Fabien Mareuil fmareuil@pasteur.fr wrote:

Hi Dannon,

I got this error with a detail view (/api/quotas/f597429621d6eb2b) when the quota has associated users with a disk usage different of 0, total_disk_usage in the user dictionary is a Decimal object and is not serializable. I worked on it this afternoon, it's possible to correct it just by adding the key 'total_disk_usage' in the value_mapper of the show method of QuotaAPIController class like the show method of UserAPIController class. I join a patch for the quota.py file with this email I can propose a pull request if you want.

Best,

-- Fabien Mareuil | Centre d'Informatique pour la Biologie fabien.mareuil@pasteur.fr | Institut Pasteur 25,28 rue du Docteur Roux 75015 Paris, France

Le 08/03/2016 16:24, Dannon Baker a écrit :

Hi Fabien,

I'm having trouble reproducing this error on my side. In the trace it looks like the error is being thrown at the collection view (/api/quotas) and not the detail view (/api/quotas/f597429621d6eb2b or the like). Is that true?

Can you show me the exact configuration of this quota in the admin panel?

On Tue, Mar 8, 2016 at 8:10 AM, Fabien Mareuil fmareuil@pasteur.fr wrote:

...

Hi,

We got an error when we used API to see a quota detail, we get the following traceback:

157.99.60.167 - - [08/Mar/2016:10:13:58 +0200] "GET /api/quotas HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:44.0) Gecko/20100101 Firefox/44.0" galaxy.web.framework.decorators ERROR 2016-03-08 10:14:10,273 Uncaught exception in exposed API method: Traceback (most recent call last): File ".../lib/galaxy/web/framework/decorators.py", line 142, in decorator rval = dumps( rval, indent=4, sort_keys=True ) File ".../lib/galaxy/util/json.py", line 65, in safe_dumps dumped = json.dumps( *args, allow_nan=False, **kwargs ) File "/usr/lib64/python2.6/json/__init__.py", line 237, in dumps **kw).encode(obj) File "/usr/lib64/python2.6/json/encoder.py", line 367, in encode chunks = list(self.iterencode(o)) File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 306, in _iterencode for chunk in self._iterencode_list(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 204, in _iterencode_list for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 317, in _iterencode for chunk in self._iterencode_default(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 323, in _iterencode_default newobj = self.default(o) File "/usr/lib64/python2.6/json/encoder.py", line 344, in default raise TypeError(repr(o) + " is not JSON serializable") TypeError: Decimal('856488698767') is not JSON serializable

json can't serialize Decimal object. I tested it with simplejson and it works. An other solution is to convert the Decimal object to a float before the dumps.

Thanks a lot for your help Best regards,

-- Fabien Mareuil | Centre d'Informatique pour la Biologie fabien.mareuil@pasteur.fr | Institut Pasteur 25,28 rue du Docteur Roux 75015 Paris, France

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