fresh (this morning) security hg pull -u: OperationalError: (OperationalError) no such column: dataset.purged - same error with a new, empty db
URL: http://localhost:8080/user/create File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/WebError-0.8a-py2.5.egg/weberror/evalexception/middleware.py', line 364 in respond File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/Paste-1.5.1-py2.5.egg/paste/debug/prints.py', line 98 in __call__ File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/Paste-1.5.1-py2.5.egg/paste/wsgilib.py', line 539 in intercept_output File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/Beaker-0.5-py2.5.egg/beaker/session.py', line 103 in __call__ File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/Paste-1.5.1-py2.5.egg/paste/recursive.py', line 80 in __call__ File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/Paste-1.5.1-py2.5.egg/paste/httpexceptions.py', line 632 in __call__ File '/home/rossl/py/galaxy_security/lib/galaxy/web/framework/base.py', line 125 in __call__ body = method( trans, **kwargs ) File '/home/rossl/py/galaxy_security/lib/galaxy/web/controllers/user.py', line 120 in create trans.app.security_agent.setup_new_user( user ) File '/home/rossl/py/galaxy_security/lib/galaxy/security/__init__.py', line 42 in setup_new_user self.user_set_default_access( user, history = True, dataset = True ) File '/home/rossl/py/galaxy_security/lib/galaxy/security/__init__.py', line 196 in user_set_default_access for history in user.active_histories: File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/orm/attributes.py', line 44 in __get__ File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/orm/attributes.py', line 279 in get File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/orm/strategies.py', line 466 in __call__ File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/orm/query.py', line 878 in all File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/orm/query.py', line 938 in __iter__ File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/orm/query.py', line 941 in _execute_and_instances File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/orm/session.py', line 628 in execute File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/engine/base.py', line 844 in execute File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/engine/base.py', line 895 in execute_clauseelement File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/engine/base.py', line 907 in _execute_compiled File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/engine/base.py', line 916 in __execute_raw File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/engine/base.py', line 960 in _cursor_execute File '/home/rossl/py/galaxy_security/eggs/py2.5-noplatform/SQLAlchemy-0.4.7p1-py2.5.egg/sqlalchemy/engine/base.py', line 942 in _handle_dbapi_exception OperationalError: (OperationalError) no such column: dataset.purged u'SELECT history.id AS history_id, history.create_time AS history_create_time, history.update_time AS history_update_time, history.user_id AS history_user_id, history.name AS history_name, history.hid_counter AS history_hid_counter, history.deleted AS history_deleted, history.purged AS history_purged, history.genome_build AS history_genome_build, dataset_1.id AS dataset_1_id, dataset_1.create_time AS dataset_1_create_time, dataset_1.update_time AS dataset_1_update_time, dataset_1.state AS dataset_1_state, dataset_1.deleted AS dataset_1_deleted, dataset_1.purged AS dataset_1_purged, dataset_1.purgable AS dataset_1_purgable, dataset_1.external_filename AS dataset_1_external_filename, dataset_1._extra_files_path AS dataset_1__extra_files_path, dataset_1.file_size AS dataset_1_file_size, history_dataset_association_1.id AS history_dataset_association_1_id, history_dataset_association_1.history_id AS history_dataset_association_1_history_id, history_dataset_association_1.dataset_id AS history_dataset_association_1_dataset_id, history_dataset_association_1.create_time AS history_dataset_association_1_create_time, history_dataset_association_1.update_time AS history_dataset_association_1_update_time, history_dataset_association_1.copied_from_history_dataset_association_id AS history_dataset_association_1_copied_from_history_dataset_association_id, history_dataset_association_1.copied_from_library_folder_dataset_association_id AS history_dataset_association_1_copied_from_library_folder_dataset_association_id, history_dataset_association_1.hid AS history_dataset_association_1_hid, history_dataset_association_1.name AS history_dataset_association_1_name, history_dataset_association_1.info AS history_dataset_association_1_info, history_dataset_association_1.blurb AS history_dataset_association_1_blurb, history_dataset_association_1.peek AS history_dataset_association_1_peek, history_dataset_association_1.extension AS history_dataset_association_1_extension, history_dataset_association_1.metadata AS history_dataset_association_1_metadata, history_dataset_association_1.parent_id AS history_dataset_association_1_parent_id, history_dataset_association_1.designation AS history_dataset_association_1_designation, history_dataset_association_1.deleted AS history_dataset_association_1_deleted, history_dataset_association_1.visible AS history_dataset_association_1_visible, dataset_2.id AS dataset_2_id, dataset_2.create_time AS dataset_2_create_time, dataset_2.update_time AS dataset_2_update_time, dataset_2.state AS dataset_2_state, dataset_2.deleted AS dataset_2_deleted, dataset_2.purged AS dataset_2_purged, dataset_2.purgable AS dataset_2_purgable, dataset_2.external_filename AS dataset_2_external_filename, dataset_2._extra_files_path AS dataset_2__extra_files_path, dataset_2.file_size AS dataset_2_file_size, history_dataset_association_2.id AS history_dataset_association_2_id, history_dataset_association_2.history_id AS history_dataset_association_2_history_id, history_dataset_association_2.dataset_id AS history_dataset_association_2_dataset_id, history_dataset_association_2.create_time AS history_dataset_association_2_create_time, history_dataset_association_2.update_time AS history_dataset_association_2_update_time, history_dataset_association_2.copied_from_history_dataset_association_id AS history_dataset_association_2_copied_from_history_dataset_association_id, history_dataset_association_2.copied_from_library_folder_dataset_association_id AS history_dataset_association_2_copied_from_library_folder_dataset_association_id, history_dataset_association_2.hid AS history_dataset_association_2_hid, history_dataset_association_2.name AS history_dataset_association_2_name, history_dataset_association_2.info AS history_dataset_association_2_info, history_dataset_association_2.blurb AS history_dataset_association_2_blurb, history_dataset_association_2.peek AS history_dataset_association_2_peek, history_dataset_association_2.extension AS history_dataset_association_2_extension, history_dataset_association_2.metadata AS history_dataset_association_2_metadata, history_dataset_association_2.parent_id AS history_dataset_association_2_parent_id, history_dataset_association_2.designation AS history_dataset_association_2_designation, history_dataset_association_2.deleted AS history_dataset_association_2_deleted, history_dataset_association_2.visible AS history_dataset_association_2_visible \nFROM history LEFT OUTER JOIN history_dataset_association AS history_dataset_association_1 ON history_dataset_association_1.history_id = history.id AND NOT history_dataset_association_1.deleted LEFT OUTER JOIN dataset AS dataset_1 ON dataset_1.id = history_dataset_association_1.dataset_id LEFT OUTER JOIN history_dataset_association AS history_dataset_association_2 ON history_dataset_association_2.history_id = history.id AND NOT dataset.purged LEFT OUTER JOIN dataset AS dataset_2 ON dataset_2.id = history_dataset_association_2.dataset_id \nWHERE history.user_id = ? AND NOT history.deleted ORDER BY history.update_time DESC, history_dataset_association_1.hid ASC, dataset_1.oid, history_dataset_association_2.hid ASC, dataset_2.oid' [1]
participants (1)
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Ross