Spunde, Alex wrote:

Hi

Trying to install Galaxy on local machine, using hg:

hg clone http://bitbucket.org/galaxy/galaxy-dist

Get error messages for two eggs:

Scrambling the following eggs failed:

docutils

GeneTrack

Here is more details for docutils (practically same for GeneTrack):

Hi Alex, The error is pretty odd - essentially, setup.py isn't being extracted from the module source. But first, is there a reason that the pre-built eggs don't work? You should be able to run 'python ./scripts/fetch_eggs.py' and get those, which would remove the need to scramble them. --nate

[aspunde@ilmnhw-biolin10 galaxy-dist]$ python scripts/scramble.py docutils

fetch_one(): Using existing source, remove to download again:

/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/archive s/docutils-0.7.tar.gz

unpack_source(): Removing old build directory at:

/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/p y2.6/docutils

unpack_source(): Unpacked to:

/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/p y2.6/docutils

copy_build_script(): Using build script /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/scripts /generic.py

run_scramble_script(): Beginning build

run_scramble_script(): Executing in /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/p y2.6/docutils:

/escher/bioinfoHW/opensource/lib/bin/python scramble.py

Traceback (most recent call last):

File "scramble.py", line 29, in <module>

execfile( "setup.py", globals(), locals() )

IOError: [Errno 2] No such file or directory: 'setup.py'

Traceback (most recent call last):

File "scripts/scramble.py", line 44, in <module>

egg.scramble()

File "/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/lib/galaxy/eggs/scrambl e.py", line 57, in scramble

self.run_scramble_script()

File "/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/lib/galaxy/eggs/scrambl e.py", line 206, in run_scramble_script

raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.name, self.version ) )

galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for docutils 0.7

Here is basic info about system:

[aspunde@ilmnhw-biolin10 galaxy-dist]$ python --version

Python 2.6

$ hg --version

Mercurial Distributed SCM (version 1.8.3)

$ uname -a

Linux ilmnhw-biolin10.hwus.illumina.com 2.6.18-164.15.1.el5 #1 SMP Wed Mar 17 11:30:06 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux

Thanks

Alex Spunde

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