Dear list, When running rmarkdown_wgcna I get the following error in the logs: PaddingError: Placeholder of length '80' too short in package bioconda::r-wgcna-1.51-r3.3.1_0. The package must be rebuilt with conda-build > 2.0. The command that seems to lead to this is: Executing command: /gpfs1/data/galaxy_server/galaxy-dev/database/dependencies/_conda/bin/conda create -y --name mulled-v1-3bfe8da4ed798836281cc963619917 317ae960c9a828f7ea05d1670c65b19619 pandoc=1.15.0.6-0 r-getopt=1.20.0 r-rmarkdown=1.2 r-plyr=1.8.4 r-highcharter=0.4.0 r-dt=0.2 r-htmltools=0.3.5 r-wgcna=1.51 Any ideas? Best, Matthias -- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------
Hi Matthias, conda-build only supported 80 chars limit for a long time. This has fixed and all new packages don't have this problem. So hopefully this PR will fix it: https://github.com/bioconda/bioconda-recipes/pull/5912 Cheers, bjeorn On 31.08.2017 17:19, Matthias Bernt wrote:
Dear list,
When running rmarkdown_wgcna I get the following error in the logs:
PaddingError: Placeholder of length '80' too short in package bioconda::r-wgcna-1.51-r3.3.1_0. The package must be rebuilt with conda-build > 2.0.
The command that seems to lead to this is:
Executing command: /gpfs1/data/galaxy_server/galaxy-dev/database/dependencies/_conda/bin/conda create -y --name mulled-v1-3bfe8da4ed798836281cc963619917 317ae960c9a828f7ea05d1670c65b19619 pandoc=1.15.0.6-0 r-getopt=1.20.0 r-rmarkdown=1.2 r-plyr=1.8.4 r-highcharter=0.4.0 r-dt=0.2 r-htmltools=0.3.5 r-wgcna=1.51
Any ideas?
Best, Matthias
Hi Bjoern, thanks for the information. Then I will check for a new version next week and check if the problem is gone. Have a great weekend. Cheers, Matthias On 31.08.2017 18:24, Björn Grüning wrote:
Hi Matthias,
conda-build only supported 80 chars limit for a long time. This has fixed and all new packages don't have this problem.
So hopefully this PR will fix it:
https://github.com/bioconda/bioconda-recipes/pull/5912
Cheers, bjeorn
On 31.08.2017 17:19, Matthias Bernt wrote:
Dear list,
When running rmarkdown_wgcna I get the following error in the logs:
PaddingError: Placeholder of length '80' too short in package bioconda::r-wgcna-1.51-r3.3.1_0. The package must be rebuilt with conda-build > 2.0.
The command that seems to lead to this is:
Executing command: /gpfs1/data/galaxy_server/galaxy-dev/database/dependencies/_conda/bin/conda create -y --name mulled-v1-3bfe8da4ed798836281cc963619917 317ae960c9a828f7ea05d1670c65b19619 pandoc=1.15.0.6-0 r-getopt=1.20.0 r-rmarkdown=1.2 r-plyr=1.8.4 r-highcharter=0.4.0 r-dt=0.2 r-htmltools=0.3.5 r-wgcna=1.51
Any ideas?
Best, Matthias
-- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------
participants (2)
-
Björn Grüning -
Matthias Bernt