I've set up a local instance of Galaxy following the instructions in the wiki for a production instance. I'm running on CentOS with Apache, and a mysql database server. Everything looks great when viewed directly through the Galaxy web server on port 8080. I've implemented the "Serving Galaxy at a sub directory (such as /galaxy)", made the change to Apache, and the universe_wsgi.ini. When I view the page through Apache using http://server.name/galaxy, the page is garbled like something didn't take. I've restarted Apache and Galaxy but its still not work... -- CONFIDENTIALITY NOTICE: This email communication may contain private, confidential, or legally privileged information intended for the sole use of the designated and/or duly authorized recipient(s). If you are not the intended recipient or have received this email in error, please notify the sender immediately by email and permanently delete all copies of this email including all attachments without reading them. If you are the intended recipient, secure the contents in a manner that conforms to all applicable state and/or federal requirements related to privacy and confidentiality of such information.
Ryan Golhar wrote:
I've set up a local instance of Galaxy following the instructions in the wiki for a production instance. I'm running on CentOS with Apache, and a mysql database server.
Everything looks great when viewed directly through the Galaxy web server on port 8080.
I've implemented the "Serving Galaxy at a sub directory (such as /galaxy)", made the change to Apache, and the universe_wsgi.ini. When I view the page through Apache using http://server.name/galaxy, the page is garbled like something didn't take.
Hi Ryan, Did you restart Galaxy after setting up the [filter:proxy-prefix] section and the 'filter-with = proxy-prefix' setting? --nate
I've restarted Apache and Galaxy but its still not work...
-- CONFIDENTIALITY NOTICE: This email communication may contain private, confidential, or legally privileged information intended for the sole use of the designated and/or duly authorized recipient(s). If you are not the intended recipient or have received this email in error, please notify the sender immediately by email and permanently delete all copies of this email including all attachments without reading them. If you are the intended recipient, secure the contents in a manner that conforms to all applicable state and/or federal requirements related to privacy and confidentiality of such information.
begin:vcard fn:Ryan Golhar, Ph.D. n:Golhar;Ryan org:The Cancer Institute of NJ;Cancer Informatics Core/Bioinformatics adr:5th floor;;120 Albany St;New Brunswick;NJ;08901;USA email;internet:golharam@umdnj.edu title:NGS Bioinformatics Specialist tel;work:(732) 235-6613 tel;fax:(732) 235-6267 tel;cell:(732) 236-1176 x-mozilla-html:FALSE url:http://www.cinj.org version:2.1 end:vcard
_______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at:
I've set up a local instance of Galaxy following the instructions in the wiki for a production instance. I'm running on CentOS with Apache, and a mysql database server.
Everything looks great when viewed directly through the Galaxy web server on port 8080.
I've implemented the "Serving Galaxy at a sub directory (such as /galaxy)", made the change to Apache, and the universe_wsgi.ini. When I view the page through Apache using http://server.name/galaxy, the page is garbled like something didn't take.
Hi Ryan,
Did you restart Galaxy after setting up the [filter:proxy-prefix] section and the 'filter-with = proxy-prefix' setting?
I did. I restarted both Apache and Galaxy. I verified it using 'ps -ef | grep python' to see that it in fact was shutdown, prior to restarting.
SOLVED. I copied/paste the Rewrite rules for apache from the wiki without updating the paths to my installation...once I did that, all worked well. On 2/17/11 5:07 PM, Ryan Golhar wrote:
I've set up a local instance of Galaxy following the instructions in the wiki for a production instance. I'm running on CentOS with Apache, and a mysql database server.
Everything looks great when viewed directly through the Galaxy web server on port 8080.
I've implemented the "Serving Galaxy at a sub directory (such as /galaxy)", made the change to Apache, and the universe_wsgi.ini. When I view the page through Apache using http://server.name/galaxy, the page is garbled like something didn't take.
Hi Ryan,
Did you restart Galaxy after setting up the [filter:proxy-prefix] section and the 'filter-with = proxy-prefix' setting?
I did. I restarted both Apache and Galaxy. I verified it using 'ps -ef | grep python' to see that it in fact was shutdown, prior to restarting.
_______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Ryan Golhar wrote:
SOLVED. I copied/paste the Rewrite rules for apache from the wiki without updating the paths to my installation...once I did that, all worked well.
Whoops, I should read ahead before I reply. Glad it's working! --nate
On 2/17/11 5:07 PM, Ryan Golhar wrote:
I've set up a local instance of Galaxy following the instructions in the wiki for a production instance. I'm running on CentOS with Apache, and a mysql database server.
Everything looks great when viewed directly through the Galaxy web server on port 8080.
I've implemented the "Serving Galaxy at a sub directory (such as /galaxy)", made the change to Apache, and the universe_wsgi.ini. When I view the page through Apache using http://server.name/galaxy, the page is garbled like something didn't take.
Hi Ryan,
Did you restart Galaxy after setting up the [filter:proxy-prefix] section and the 'filter-with = proxy-prefix' setting?
I did. I restarted both Apache and Galaxy. I verified it using 'ps -ef | grep python' to see that it in fact was shutdown, prior to restarting.
_______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at:
_______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Ryan Golhar wrote:
I've implemented the "Serving Galaxy at a sub directory (such as /galaxy)", made the change to Apache, and the universe_wsgi.ini. When I view the page through Apache using http://server.name/galaxy, the page is garbled like something didn't take.
Hi Ryan,
Did you restart Galaxy after setting up the [filter:proxy-prefix] section and the 'filter-with = proxy-prefix' setting?
I did. I restarted both Apache and Galaxy. I verified it using 'ps -ef | grep python' to see that it in fact was shutdown, prior to restarting.
Okay, if you're using the static content proxying as in the instructions, can you verify that those paths are correct? For example, the URL: http://server.name/galaxy/static/images/galaxyIcon_noText.png Should display a small icon. --nate
participants (2)
-
Nate Coraor -
Ryan Golhar