On Apr 3, 2013, at 7:28 PM, Anthonius deBoer wrote:

It seems that the examples in the jobs_conf.xml file incorrectly defines the DRMAA runner as

galaxy.jobs.runners.drmaa:DRMAARunner

which should be

galaxy.jobs.runners.drmaa:DRMAAJobRunner

It's really unhelpful if a major change to the way things are run contains these kinds of issues/bugs in the examples, since there is not much on the wikki pages on what are the pre-defined runners......

Hi Thon,

The runners available with Galaxy are documented here:

http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster

And the documentation for the job_conf.xml in general is here:

http://wiki.galaxyproject.org/Admin/Config/Jobs

If the documentation is missing anything, please let us know.

I had to dig down in the code to figure out the DRMAA runners name...

Hope this helps others getting DRMAA to run in Galaxy after this major update...

Sorry for this oversight and thanks for pointing it out. It's been fixed in the stable branch.

Thanks, --nate

Thon ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

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