Datatype display_in_upload not respected in upload1
Hi all, I noticed that when I go in "Get Data" -> "Upload File from your computer" (i.e. upload1 tool) the "File Format" list contains also datatypes which have display_in_upload="false" in datatypes_conf.xml (e.g. "afg", "fli"), while the list does not contain datatypes which have no display_in_upload attribute at all (e.g. "bedstrict", "bed6"). This sounds like a bug to me, but I have not found any reference around. Thanks, Nicola -- Nicola Soranzo, Ph.D. CRS4 Bioinformatics Program Loc. Piscina Manna 09010 Pula (CA), Italy http://www.bioinformatica.crs4.it/
Good catch - thanks for reporting it: https://trello.com/card/display-in-upload-not-respected-in-datatypes-conf-xm... Carl On Thu, Feb 14, 2013 at 12:50 PM, Nicola Soranzo <soranzo@crs4.it> wrote:
Hi all, I noticed that when I go in "Get Data" -> "Upload File from your computer" (i.e. upload1 tool) the "File Format" list contains also datatypes which have display_in_upload="false" in datatypes_conf.xml (e.g. "afg", "fli"), while the list does not contain datatypes which have no display_in_upload attribute at all (e.g. "bedstrict", "bed6"). This sounds like a bug to me, but I have not found any reference around.
Thanks, Nicola -- Nicola Soranzo, Ph.D. CRS4 Bioinformatics Program Loc. Piscina Manna 09010 Pula (CA), Italy http://www.bioinformatica.crs4.it/
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Hi Nicola, Thanks again for reporting this error. This has been fixed in stable. Thanks for using Galaxy, Dan galaxy-central$ hg head changeset: 8914:31b09605fcc3 branch: stable tag: tip parent: 8908:a0741e6798f2 user: Daniel Blankenberg <dan@bx.psu.edu> date: Thu Feb 21 15:26:15 2013 -0500 summary: Fix for display_in_upload changeset: 8913:26d7b89d9f89 user: Daniel Blankenberg <dan@bx.psu.edu> date: Thu Feb 21 15:26:15 2013 -0500 summary: Fix for display_in_upload On Feb 21, 2013, at 12:12 PM, Carl Eberhard wrote:
Good catch - thanks for reporting it:
https://trello.com/card/display-in-upload-not-respected-in-datatypes-conf-xm...
Carl
On Thu, Feb 14, 2013 at 12:50 PM, Nicola Soranzo <soranzo@crs4.it> wrote: Hi all, I noticed that when I go in "Get Data" -> "Upload File from your computer" (i.e. upload1 tool) the "File Format" list contains also datatypes which have display_in_upload="false" in datatypes_conf.xml (e.g. "afg", "fli"), while the list does not contain datatypes which have no display_in_upload attribute at all (e.g. "bedstrict", "bed6"). This sounds like a bug to me, but I have not found any reference around.
Thanks, Nicola -- Nicola Soranzo, Ph.D. CRS4 Bioinformatics Program Loc. Piscina Manna 09010 Pula (CA), Italy http://www.bioinformatica.crs4.it/
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Thanks Dan, the fix works for me too! Nicola Il giorno gio, 21/02/2013 alle 15.37 -0500, Daniel Blankenberg ha scritto:
Hi Nicola,
Thanks again for reporting this error. This has been fixed in stable.
Thanks for using Galaxy,
Dan
galaxy-central$ hg head changeset: 8914:31b09605fcc3 branch: stable tag: tip parent: 8908:a0741e6798f2 user: Daniel Blankenberg <dan@bx.psu.edu> date: Thu Feb 21 15:26:15 2013 -0500 summary: Fix for display_in_upload
changeset: 8913:26d7b89d9f89 user: Daniel Blankenberg <dan@bx.psu.edu> date: Thu Feb 21 15:26:15 2013 -0500 summary: Fix for display_in_upload
On Feb 21, 2013, at 12:12 PM, Carl Eberhard wrote:
Good catch - thanks for reporting it:
https://trello.com/card/display-in-upload-not-respected-in-datatypes-conf-xm...
Carl
On Thu, Feb 14, 2013 at 12:50 PM, Nicola Soranzo <soranzo@crs4.it> wrote: Hi all, I noticed that when I go in "Get Data" -> "Upload File from your computer" (i.e. upload1 tool) the "File Format" list contains also datatypes which have display_in_upload="false" in datatypes_conf.xml (e.g. "afg", "fli"), while the list does not contain datatypes which have no display_in_upload attribute at all (e.g. "bedstrict", "bed6"). This sounds like a bug to me, but I have not found any reference around.
Thanks, Nicola -- Nicola Soranzo, Ph.D. CRS4 Bioinformatics Program Loc. Piscina Manna 09010 Pula (CA), Italy http://www.bioinformatica.crs4.it/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (3)
-
Carl Eberhard -
Daniel Blankenberg -
Nicola Soranzo