Error downloading output file from Galaxy
Hello all - I'm working on a tool for Galaxy that generates an output file. I am able to view the file without issue in Galaxy itself, but when I click on the "Download" icon, the History sidebar produces the following error message: "Unable to remove temporary library download archive and directory" Checking the log files, I see the following entry: galaxy.web.controllers.dataset ERROR 2012-01-17 23:14:05,599 Unable to remove temporary library download archive and directory Traceback (most recent call last): File "/n/galaxy/www/galaxy/lib/galaxy/web/controllers/dataset.py", line 284, in archive_composite_dataset os.rmdir( tmpd ) OSError: [Errno 39] Directory not empty: './database/tmp/tmprofQCp' Listing the contents on the referenced directory shows it to be empty: $ ls -la database/tmp/tmprofQCp total 16 drwx------ 2 galaxy galaxy_lab 1024 2012-01-17 23:14 . drwxrwx--- 8 galaxy galaxy_lab 1024 2012-01-17 23:14 .. Does anyone have any ideas as to what might be happening? Thank you! Cory
On Jan 17, 2012, at 11:19 PM, Cory Spencer wrote:
Hello all -
I'm working on a tool for Galaxy that generates an output file. I am able to view the file without issue in Galaxy itself, but when I click on the "Download" icon, the History sidebar produces the following error message:
"Unable to remove temporary library download archive and directory"
Checking the log files, I see the following entry:
galaxy.web.controllers.dataset ERROR 2012-01-17 23:14:05,599 Unable to remove temporary library download archive and directory Traceback (most recent call last): File "/n/galaxy/www/galaxy/lib/galaxy/web/controllers/dataset.py", line 284, in archive_composite_dataset os.rmdir( tmpd ) OSError: [Errno 39] Directory not empty: './database/tmp/tmprofQCp'
Listing the contents on the referenced directory shows it to be empty:
$ ls -la database/tmp/tmprofQCp total 16 drwx------ 2 galaxy galaxy_lab 1024 2012-01-17 23:14 . drwxrwx--- 8 galaxy galaxy_lab 1024 2012-01-17 23:14 ..
Does anyone have any ideas as to what might be happening?
Hi Cory, I'm just following up in case you missed the relevant email on another thread. Ross fixed this on the 19th, and the fix is in the latest stable distribution. Thanks for reporting this and for using Galaxy! --nate
Thank you!
Cory ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
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Cory Spencer -
Nate Coraor