Hello, The tool you are looking for is: galaxy-dist / tools / fastq / fastq_combiner.py galaxy-dist / tools / fastq / fastq_combiner.xml Hopefully this helps. Next time, please be sure to send questions directly to the galaxy-dev@bx.psu.edu email address. Your question went to "galaxy-dev-owner@lists.bx.psu.edu" originally, which is not the mailing list, but a way to reach the list moderators if there is a technical problem. Take care, Jen Galaxy team On 1/7/13 3:09 AM, wei liu wrote:> Dear all,

I have used the local galaxy, and I want to find out which script is used to Combine FASTA and QUAL <https://main.g2.bx.psu.edu/tool_runner?tool_id=fastq_combiner> into FASTQ. I have tried the scripts in galaxy-dist/tools/next_gen_conversion/solid2fastq.py, but it can not merge the several lines which belong to the same sequence.

Looking forward for your reply!

Best Regards, Wei Liu.

-- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org