environment for jobs - galaxy-dev

21 Feb 2018


      Dear list,
there seem to be two ways to setup an environment for jobs:
- in galaxy.ini: variable environment_setup_file
- in job_conf.xml: <env> tag in the destinations
I'm wondering what the rationale is behind these two options?
Is it to setup special environments for each destination?
I guess that both should be loaded in each job. But in which order?
I guessed that the file given in the <env> tag is sourced in the job 
submit scripts, but this seems to happen not for all jobs...?
Best,
Matthias
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Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt@ufz.de, www.ufz.de

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