Shantanu Pavgi wrote:

I am configuring galaxy to use a shared filesystem location as it's TEMP directory. I have modified $TEMP variable with the necessary path. Are there any other changes that I need to make? The cluster config page https://bitbucket.org/galaxy/galaxy-central/wiki/Config/Cluster mentions about removing or commenting out tool runner configuration, example below:

Hi Shantanu,

You should also set new_file_path in universe_wsgi.ini to the same value you set $TEMP to - this has recently superceded the use of $TEMP.

{{{ [galaxy:tool_runners]

biomart = local:/// encode_db1 = local:/// hbvar = local:/// microbial_import1 = local:/// ucsc_table_direct1 = local:/// ucsc_table_direct_archaea1 = local:/// ucsc_table_direct_test1 = local:/// upload1 = local:/// }}}

Should we replace it with some other value or completely remove it? Also, what should it be set to for any additional tools that we install?

You can remove or comment these values. Additional tools, assuming they can run on your cluster, can simply be left out of the universe_wsgi.ini file entirely, and will then use the job runner defined by default_cluster_job_runner

--nate

-- Thanks, Shantanu.

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