Searching tool shed for file format definitions?
Hello all, I was wondering how people keep track of the available file format definitions in the tool shed(s)? For core file types defined in Galaxy, I can just view the datatypes_conf.xml file and/or the classes in lib/galaxy/datatypes/ - but how can I do something similar on a Galaxy Tool Shed? One solution might be automatic functional categories: tool shed repositories which define a format, or define a tool for the user, or define a dependency for use by other tools, etc Thanks, Peter
Hi Peter, This is not yet available, but something I've been planning to do for quite a while. I've opened the following Trello card for this. I'm not exactly sure yet how this will be implemented as I haven't thought this completely though. Of course, ideas from the community are always welcome, and yours below will be incorporated in some capacity. I'll try to have this worked out over the next few weeks. My primary focus right now is Galaxy flavors, but I'll work this in as bandwidth allows. https://trello.com/card/toolshed-add-support-for-search-tool-shed-repositori... Thanks Peter, Greg Von Kuster On Feb 19, 2013, at 11:18 AM, Peter Cock wrote:
Hello all,
I was wondering how people keep track of the available file format definitions in the tool shed(s)? For core file types defined in Galaxy, I can just view the datatypes_conf.xml file and/or the classes in lib/galaxy/datatypes/ - but how can I do something similar on a Galaxy Tool Shed?
One solution might be automatic functional categories: tool shed repositories which define a format, or define a tool for the user, or define a dependency for use by other tools, etc
Thanks,
Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
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Greg Von Kuster
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Peter Cock