Hi
We have been using trackster much more in recent times - It really has improved a lot (especially its stability) over the last few years - thank you very much.
We are running into a little annoying issue: when we display wiggle files, bedgraph files, bam files in coverage mode, etc, the max value gets somehow calculated. Very often, we want to change that, ie in order to see the full heights of the peaks instead of the capped peaks. This can be easily done by changing the "set max value" at the right hand side of the track.
Unfortunately, the new value does not get stored. No matter, whether we click on safe or not. So next time we wanna a look at the same visualization again, we have to set the 'max value' again.
Is this a known missing feature (bug) ? I just wanna check before I create a Trello card - so far, I couldn't find in in Trello.
Thanks for your help Hans-Rudolf
Hi Hans,
Sorry for the slow reply. Please go ahead and create a card so this issue doesn’t get lost. IIRC, one challenge here is that fixing the min/max can lead to weird views when you move around the genome where the min/max changes. I think this was the original reason that max (and min?) were not saved, but perhaps the explicit approach is the right approach here.
Best, J.
-- Jeremy Goecks Assistant Professor of Computational Biology George Washington University
On Mar 19, 2015, at 7:13 AM, Hans-Rudolf Hotz hrh@fmi.ch wrote:
Hi
We have been using trackster much more in recent times - It really has improved a lot (especially its stability) over the last few years - thank you very much.
We are running into a little annoying issue: when we display wiggle files, bedgraph files, bam files in coverage mode, etc, the max value gets somehow calculated. Very often, we want to change that, ie in order to see the full heights of the peaks instead of the capped peaks. This can be easily done by changing the "set max value" at the right hand side of the track.
Unfortunately, the new value does not get stored. No matter, whether we click on safe or not. So next time we wanna a look at the same visualization again, we have to set the 'max value' again.
Is this a known missing feature (bug) ? I just wanna check before I create a Trello card - so far, I couldn't find in in Trello.
Thanks for your help Hans-Rudolf
--
Hans-Rudolf Hotz, PhD Bioinformatics Support
Friedrich Miescher Institute for Biomedical Research Maulbeerstrasse 66 4058 Basel/Switzerland ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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