Dear list,
I have stumbled on some strange behaviour when uploading files to galaxy via the upload.py tool. At times, the upload seems to be stalled in history and is never actually performed, followed by a seemingly infinite history update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the behaviour in both my own modified galaxy install (based on galaxy-dist), and in a fresh clone from galaxy-central.
I have tried to upload different files, and all seem to sometimes trigger the behaviour, but not all the time. A restart of galaxy sometimes sorts things out. Common for the debug messages is that it seems there is never a job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 10:06:36,186 tool upload1 created job id 2".
Has anyone seen similar things or can it be a problem with my system?
cheers, jorrit
--------------Debug messa:
galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request returned None from get_history(): http://localhost:8080/ 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
Hi
I guess we see similar things: a new history item is created, it turns purple, stays like this apparently forever while no job id is created (ie I don't see the job in any of the report tools).
To be honest we ignore them, because:
a) it only (as far as I can tell) happens with big data files (we try to avoid this anyway by using 'Data libraries') while there is heavy load on the storage system
b) ...eventually, unless the user has deleted the history item, it does turn green and the job is listed as 'ok'.
Do you experience this problem with all files, even small ones?
Regards, Hans
On 02/22/2012 10:14 AM, Jorrit Boekel wrote:
Dear list,
I have stumbled on some strange behaviour when uploading files to galaxy via the upload.py tool. At times, the upload seems to be stalled in history and is never actually performed, followed by a seemingly infinite history update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the behaviour in both my own modified galaxy install (based on galaxy-dist), and in a fresh clone from galaxy-central.
I have tried to upload different files, and all seem to sometimes trigger the behaviour, but not all the time. A restart of galaxy sometimes sorts things out. Common for the debug messages is that it seems there is never a job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 10:06:36,186 tool upload1 created job id 2".
Has anyone seen similar things or can it be a problem with my system?
cheers, jorrit
--------------Debug messa:
galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request returned None from get_history(): http://localhost:8080/ 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
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Hi all,
We get the behavior mentioned some times too, its not reproducible just like you mentioned. Some times it happens with small files, some times with large files and again as you said it doesn't happen all the time.
Now I haven't seen this yet on our Galaxy dev server which is the latest galaxy-dist, only see this on our Galaxy production which is an older version of galaxy-dist from last winter.
regards, Leandro
On Wed, Feb 22, 2012 at 3:59 PM, Hans-Rudolf Hotz hrh@fmi.ch wrote:
Hi
I guess we see similar things: a new history item is created, it turns purple, stays like this apparently forever while no job id is created (ie I don't see the job in any of the report tools).
To be honest we ignore them, because:
a) it only (as far as I can tell) happens with big data files (we try to avoid this anyway by using 'Data libraries') while there is heavy load on the storage system
b) ...eventually, unless the user has deleted the history item, it does turn green and the job is listed as 'ok'.
Do you experience this problem with all files, even small ones?
Regards, Hans
On 02/22/2012 10:14 AM, Jorrit Boekel wrote:
Dear list,
I have stumbled on some strange behaviour when uploading files to galaxy via the upload.py tool. At times, the upload seems to be stalled in history and is never actually performed, followed by a seemingly infinite history update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the behaviour in both my own modified galaxy install (based on galaxy-dist), and in a fresh clone from galaxy-central.
I have tried to upload different files, and all seem to sometimes trigger the behaviour, but not all the time. A restart of galaxy sometimes sorts things out. Common for the debug messages is that it seems there is never a job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 10:06:36,186 tool upload1 created job id 2".
Has anyone seen similar things or can it be a problem with my system?
cheers, jorrit
--------------Debug messa:
galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request returned None from get_history(): http://localhost:8080/ 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi,
I haven't been patient enough to wait really long, but I can give that a try.
As Leandro mentioned, I've also seen it in kilobyte to megabyte sized files. My Galaxy is forked from the latest galaxy-dist.
cheers, jorrit
On 02/22/2012 04:47 PM, Leandro Hermida wrote:
Hi all,
We get the behavior mentioned some times too, its not reproducible just like you mentioned. Some times it happens with small files, some times with large files and again as you said it doesn't happen all the time.
Now I haven't seen this yet on our Galaxy dev server which is the latest galaxy-dist, only see this on our Galaxy production which is an older version of galaxy-dist from last winter.
regards, Leandro
On Wed, Feb 22, 2012 at 3:59 PM, Hans-Rudolf Hotzhrh@fmi.ch wrote:
Hi
I guess we see similar things: a new history item is created, it turns purple, stays like this apparently forever while no job id is created (ie I don't see the job in any of the report tools).
To be honest we ignore them, because:
a) it only (as far as I can tell) happens with big data files (we try to avoid this anyway by using 'Data libraries') while there is heavy load on the storage system
b) ...eventually, unless the user has deleted the history item, it does turn green and the job is listed as 'ok'.
Do you experience this problem with all files, even small ones?
Regards, Hans
On 02/22/2012 10:14 AM, Jorrit Boekel wrote:
Dear list,
I have stumbled on some strange behaviour when uploading files to galaxy via the upload.py tool. At times, the upload seems to be stalled in history and is never actually performed, followed by a seemingly infinite history update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the behaviour in both my own modified galaxy install (based on galaxy-dist), and in a fresh clone from galaxy-central.
I have tried to upload different files, and all seem to sometimes trigger the behaviour, but not all the time. A restart of galaxy sometimes sorts things out. Common for the debug messages is that it seems there is never a job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 10:06:36,186 tool upload1 created job id 2".
Has anyone seen similar things or can it be a problem with my system?
cheers, jorrit
--------------Debug messa:
galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request returned None from get_history(): http://localhost:8080/ 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
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I confirm the same strange behaviour since some of the last updates on the central version. We are at the latest now. It is also with medium (10Mb+ tarballs) AND large files! Furthermore its seems to be in FireFox only.... They upload fine using IE8 or 9. Didn't test other browsers though.
Annoying it is indeed.
Alex
-----Oorspronkelijk bericht----- Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Jorrit Boekel Verzonden: woensdag 22 februari 2012 10:15 Aan: galaxy-dev@lists.bx.psu.edu Onderwerp: [galaxy-dev] uploads stuck in history
Dear list,
I have stumbled on some strange behaviour when uploading files to galaxy via the upload.py tool. At times, the upload seems to be stalled in history and is never actually performed, followed by a seemingly infinite history update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the behaviour in both my own modified galaxy install (based on galaxy-dist), and in a fresh clone from galaxy-central.
I have tried to upload different files, and all seem to sometimes trigger the behaviour, but not all the time. A restart of galaxy sometimes sorts things out. Common for the debug messages is that it seems there is never a job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 10:06:36,186 tool upload1 created job id 2".
Has anyone seen similar things or can it be a problem with my system?
cheers, jorrit
--------------Debug messa:
galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request returned None from get_history(): http://localhost:8080/ 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
By any chance, do you all happen to be using the nginx upload module? I am guessing not.
--nate
On Feb 23, 2012, at 3:16 AM, Bossers, Alex wrote:
I confirm the same strange behaviour since some of the last updates on the central version. We are at the latest now. It is also with medium (10Mb+ tarballs) AND large files! Furthermore its seems to be in FireFox only.... They upload fine using IE8 or 9. Didn't test other browsers though.
Annoying it is indeed.
Alex
-----Oorspronkelijk bericht----- Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Jorrit Boekel Verzonden: woensdag 22 februari 2012 10:15 Aan: galaxy-dev@lists.bx.psu.edu Onderwerp: [galaxy-dev] uploads stuck in history
Dear list,
I have stumbled on some strange behaviour when uploading files to galaxy via the upload.py tool. At times, the upload seems to be stalled in history and is never actually performed, followed by a seemingly infinite history update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the behaviour in both my own modified galaxy install (based on galaxy-dist), and in a fresh clone from galaxy-central.
I have tried to upload different files, and all seem to sometimes trigger the behaviour, but not all the time. A restart of galaxy sometimes sorts things out. Common for the debug messages is that it seems there is never a job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 10:06:36,186 tool upload1 created job id 2".
Has anyone seen similar things or can it be a problem with my system?
cheers, jorrit
--------------Debug messa:
galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request returned None from get_history(): http://localhost:8080/ 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
I had same issue recently. I tried to upload files locally and give same error (from 50Mb or 17Gb as admin). The files never finish uploading. A few days ago I tried to upload around 20 files (up to 200Mb), most of them uploaded normally, but some wouldn't. I will try a different browser them Thanks.
127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1"
200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
Luciano
Hi, I was trying to upload data again and here is the error message that I get:
Can't create peek [Errno 2] No such file or directory: '/home/koala2/galaxy-dist/database/files/000/dataset_24.dat'
---------------------------------------- Exception happened during processing of request from ('127.0.0.1', 52338) Traceback (most recent call last): File "/home/koala2/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 1053, in process_request_in_thread self.finish_request(request, client_address) File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request self.RequestHandlerClass(request, client_address, self) File "/usr/lib/python2.7/SocketServer.py", line 639, in __init__ self.handle() File "/home/koala2/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 432, in handle BaseHTTPRequestHandler.handle(self) File "/usr/lib/python2.7/BaseHTTPServer.py", line 343, in handle self.handle_one_request() File "/home/koala2/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 427, in handle_one_request self.wsgi_execute() File "/home/koala2/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 287, in wsgi_execute self.wsgi_start_response) File "/home/koala2/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/urlmap.py", line 202, in __call__ return app(environ, start_response) File "/home/koala2/galaxy-dist/lib/galaxy/web/framework/middleware/xforwardedhost.py", line 21, in __call__ return self.app( environ, start_response ) File "/home/koala2/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/config.py", line 164, in __call__ app_iter = self.application(environ, start_response) File "/home/koala2/galaxy-dist/lib/galaxy/web/framework/middleware/translogger.py", line 68, in __call__ return self.application(environ, replacement_start_response) File "/home/koala2/galaxy-dist/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py", line 226, in __call__ return self.respond(environ, start_response) File "/home/koala2/galaxy-dist/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py", line 399, in respond if self.xmlhttp_key in req.params: File "/home/koala2/galaxy-dist/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", line 900, in params params = self.str_params File "/home/koala2/galaxy-dist/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", line 892, in str_params return NestedMultiDict(self.str_GET, self.str_POST) File "/home/koala2/galaxy-dist/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", line 818, in str_POST keep_blank_values=True) File "/usr/lib/python2.7/cgi.py", line 508, in __init__ self.read_multi(environ, keep_blank_values, strict_parsing) File "/usr/lib/python2.7/cgi.py", line 632, in read_multi environ, keep_blank_values, strict_parsing) File "/usr/lib/python2.7/cgi.py", line 510, in __init__ self.read_single() File "/usr/lib/python2.7/cgi.py", line 647, in read_single self.read_lines() File "/home/koala2/galaxy-dist/lib/galaxy/web/framework/base.py", line 268, in read_lines self.read_lines_to_outerboundary() File "/usr/lib/python2.7/cgi.py", line 697, in read_lines_to_outerboundary line = self.fp.readline(1<<16) File "/home/koala2/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 467, in readline data = self.file.readline(self.length - self._consumed) File "/usr/lib/python2.7/socket.py", line 412, in readline bline = buf.readline(size) OverflowError: signed integer is greater than maximum ----------------------------------------
On Mon, Mar 5, 2012 at 3:24 PM, Luciano Cosme cosme.simple@gmail.comwrote:
I had same issue recently. I tried to upload files locally and give same error (from 50Mb or 17Gb as admin). The files never finish uploading. A few days ago I tried to upload around 20 files (up to 200Mb), most of them uploaded normally, but some wouldn't. I will try a different browser them Thanks.
127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu
HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
Hi Nate,
I wasn't before, but I switched to nginx now. Non-uploading is still happening in firefox (10.0.2 on ubuntu 11.10).
I can't be 100% sure that my nginx install was correct, but it's definitely serving galaxy and not complaining. Is there any way to verify uploads are processed through nginx?
jorrit
On 03/05/2012 08:37 PM, Nate Coraor wrote:
By any chance, do you all happen to be using the nginx upload module? I am guessing not.
--nate
On Feb 23, 2012, at 3:16 AM, Bossers, Alex wrote:
I confirm the same strange behaviour since some of the last updates on the central version. We are at the latest now. It is also with medium (10Mb+ tarballs) AND large files! Furthermore its seems to be in FireFox only.... They upload fine using IE8 or 9. Didn't test other browsers though.
Annoying it is indeed.
Alex
-----Oorspronkelijk bericht----- Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Jorrit Boekel Verzonden: woensdag 22 februari 2012 10:15 Aan: galaxy-dev@lists.bx.psu.edu Onderwerp: [galaxy-dev] uploads stuck in history
Dear list,
I have stumbled on some strange behaviour when uploading files to galaxy via the upload.py tool. At times, the upload seems to be stalled in history and is never actually performed, followed by a seemingly infinite history update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the behaviour in both my own modified galaxy install (based on galaxy-dist), and in a fresh clone from galaxy-central.
I have tried to upload different files, and all seem to sometimes trigger the behaviour, but not all the time. A restart of galaxy sometimes sorts things out. Common for the debug messages is that it seems there is never a job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 10:06:36,186 tool upload1 created job id 2".
Has anyone seen similar things or can it be a problem with my system?
cheers, jorrit
--------------Debug messa:
galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request returned None from get_history(): http://localhost:8080/ 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
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Hello,
We don't use the nginx module
kind regards, Leandro
On Wed, Mar 7, 2012 at 4:42 PM, Jorrit Boekel jorrit.boekel@scilifelab.se wrote:
Hi Nate,
I wasn't before, but I switched to nginx now. Non-uploading is still happening in firefox (10.0.2 on ubuntu 11.10).
I can't be 100% sure that my nginx install was correct, but it's definitely serving galaxy and not complaining. Is there any way to verify uploads are processed through nginx?
jorrit
On 03/05/2012 08:37 PM, Nate Coraor wrote:
By any chance, do you all happen to be using the nginx upload module? I am guessing not.
--nate
On Feb 23, 2012, at 3:16 AM, Bossers, Alex wrote:
I confirm the same strange behaviour since some of the last updates on the central version. We are at the latest now. It is also with medium (10Mb+ tarballs) AND large files! Furthermore its seems to be in FireFox only.... They upload fine using IE8 or 9. Didn't test other browsers though.
Annoying it is indeed.
Alex
-----Oorspronkelijk bericht----- Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Jorrit Boekel Verzonden: woensdag 22 februari 2012 10:15 Aan: galaxy-dev@lists.bx.psu.edu Onderwerp: [galaxy-dev] uploads stuck in history
Dear list,
I have stumbled on some strange behaviour when uploading files to galaxy via the upload.py tool. At times, the upload seems to be stalled in history and is never actually performed, followed by a seemingly infinite history update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the behaviour in both my own modified galaxy install (based on galaxy-dist), and in a fresh clone from galaxy-central.
I have tried to upload different files, and all seem to sometimes trigger the behaviour, but not all the time. A restart of galaxy sometimes sorts things out. Common for the debug messages is that it seems there is never a job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 10:06:36,186 tool upload1 created job id 2".
Has anyone seen similar things or can it be a problem with my system?
cheers, jorrit
--------------Debug messa:
galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request returned None from get_history(): http://localhost:8080/ 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
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The same for us. We never changed anything on our local dev or prod server. The dev server which runs the latest central edition is still suffering from it. Earlier there was no problem at all. Why is it the ngnix issue? Alex
-----Oorspronkelijk bericht----- Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Leandro Hermida Verzonden: donderdag 8 maart 2012 12:43 Aan: Jorrit Boekel CC: galaxy-dev@lists.bx.psu.edu Onderwerp: Re: [galaxy-dev] uploads stuck in history
Hello,
We don't use the nginx module
kind regards, Leandro
On Wed, Mar 7, 2012 at 4:42 PM, Jorrit Boekel jorrit.boekel@scilifelab.se wrote:
Hi Nate,
I wasn't before, but I switched to nginx now. Non-uploading is still happening in firefox (10.0.2 on ubuntu 11.10).
I can't be 100% sure that my nginx install was correct, but it's definitely serving galaxy and not complaining. Is there any way to verify uploads are processed through nginx?
jorrit
On 03/05/2012 08:37 PM, Nate Coraor wrote:
By any chance, do you all happen to be using the nginx upload module? I am guessing not.
--nate
On Feb 23, 2012, at 3:16 AM, Bossers, Alex wrote:
I confirm the same strange behaviour since some of the last updates on the central version. We are at the latest now. It is also with medium (10Mb+ tarballs) AND large files! Furthermore its seems to be in FireFox only.... They upload fine using IE8 or 9. Didn't test other browsers though.
Annoying it is indeed.
Alex
-----Oorspronkelijk bericht----- Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Jorrit Boekel Verzonden: woensdag 22 februari 2012 10:15 Aan: galaxy-dev@lists.bx.psu.edu Onderwerp: [galaxy-dev] uploads stuck in history
Dear list,
I have stumbled on some strange behaviour when uploading files to galaxy via the upload.py tool. At times, the upload seems to be stalled in history and is never actually performed, followed by a seemingly infinite history update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the behaviour in both my own modified galaxy install (based on galaxy-dist), and in a fresh clone from galaxy-central.
I have tried to upload different files, and all seem to sometimes trigger the behaviour, but not all the time. A restart of galaxy sometimes sorts things out. Common for the debug messages is that it seems there is never a job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 10:06:36,186 tool upload1 created job id 2".
Has anyone seen similar things or can it be a problem with my system?
cheers, jorrit
--------------Debug messa:
galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request returned None from get_history(): http://localhost:8080/ 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:8080/root/tool_menu" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
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___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
galaxy-dev@lists.galaxyproject.org
-
Bossers, Alex -
Hans-Rudolf Hotz -
Jorrit Boekel -
Leandro Hermida -
Luciano Cosme -
Nate Coraor