We agree that this is a good parameter to have available, and are
going to be adding this in the near future.
On Oct 19, 2010, at 2:11 PM, Al Simons wrote:
I'm a new Galaxy tool integrator. I'm integrating a tool
requires the secondary Bowtie output file of the reads it couldn't
map due to there being too many matching locations (greater than the
value specified by the -m option). This file is specified in Bowtie
with the --max <filename> option.
I don't see a way to request this additional output with the current
Bowtie jacket and xml. Has anyone already modified the jacket to
I'm about to start delving into the Bowtie jacket and xml.
Thanks for any pointers
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